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  • WFS1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:58.1 nTPM
FANTOM5:209.4 Scaled Tags Per Million
Pig:414.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029128
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.1
Samples: 246

Max nTPM: 126.9
Min nTPM: 17.5
Std nTPM: 19.2
Median nTPM: 56.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 126.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 104.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 104.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 103.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 101.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 100.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 100.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 99.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 98.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 98.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 95.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 95.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 93.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 92.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 91.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 90.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 90.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 89.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 88.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 88.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 87.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 86.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 85.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 84.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 83.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 83.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 82.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 82.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 82.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 81.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 80.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 80.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 79.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 79.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 78.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 78.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 78.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 77.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 77.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 77.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 77.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 77.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 76.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 76.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 74.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 74.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 74.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 74.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 74.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 73.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 73.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 71.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 71.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 70.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 70.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 70.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 69.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 69.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 68.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 68.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 68.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 68.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 67.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 67.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 67.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 67.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 66.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 66.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 66.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 66.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 66.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 66.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 65.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 65.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 64.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 64.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 64.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 64.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 64.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 64.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 64.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 64.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 64.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 64.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 64.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 62.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 62.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 62.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 62.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 61.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 61.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 61.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 60.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 60.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 60.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 59.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 58.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 58.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 58.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 58.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 58.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 58.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 58.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 58.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 58.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 58.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 57.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 57.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 57.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 57.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 57.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 57.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 57.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 57.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 56.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 56.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 56.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 56.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 56.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 56.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 55.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 55.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 55.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 55.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 55.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 55.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 55.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 54.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 54.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 54.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 54.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 54.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 53.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 53.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 52.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 52.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 52.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 52.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 52.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 52.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 52.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 51.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 51.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 51.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 51.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 51.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 50.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 50.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 50.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 50.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 50.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 49.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 49.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 49.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 49.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 49.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 49.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 49.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 49.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 48.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 48.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 48.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 48.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 48.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 47.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 47.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 47.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 47.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 47.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 47.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 47.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 46.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 46.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 45.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 45.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 44.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 44.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 44.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 44.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 44.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 44.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 43.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 43.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 42.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 42.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 42.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 42.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 42.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 42.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 42.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 42.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 42.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 42.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 42.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 41.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 41.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 41.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 41.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 41.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 41.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 41.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 41.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 40.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 39.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 37.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 37.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 36.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 36.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 35.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 33.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 32.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 31.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 31.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 31.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 31.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 31.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 29.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 28.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 27.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 27.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 27.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 27.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 27.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 26.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 26.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 26.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 24.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 21.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 21.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 21.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 18.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 18.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 17.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

209.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 209.4
FF:10164-103B2 76 years, female 209.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.9
Pig sample Sample description nTPM
Caudate
nTPM: 414.9
Samples: 4

Max nTPM: 502.0
Min nTPM: 273.1
Sample A Female 478.7
Sample B Female 502.0
Sample C Male 405.8
Sample D Male 273.1

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