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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:178.8 nTPM
FANTOM5:211.9 Scaled Tags Per Million
Pig:145.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006550
Glial cells Medium
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 178.8
Samples: 246

Max nTPM: 362.5
Min nTPM: 103.1
Std nTPM: 44.1
Median nTPM: 170.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 362.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 335.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 326.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 317.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 317.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 308.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 288.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 285.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 278.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 271.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 267.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 265.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 256.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 254.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 254.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 253.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 253.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 250.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 247.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 246.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 244.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 241.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 237.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 237.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 235.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 235.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 234.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 231.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 230.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 230.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 230.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 229.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 227.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 227.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 226.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 225.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 222.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 221.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 220.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 220.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 220.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 219.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 218.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 218.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 216.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 216.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 215.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 213.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 211.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 207.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 204.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 203.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 203.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 201.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 200.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 200.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 199.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 198.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 198.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 198.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 198.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 197.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 197.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 197.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 195.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 194.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 194.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 193.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 193.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 192.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 192.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 192.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 191.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 190.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 190.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 190.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 189.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 188.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 188.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 187.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 187.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 187.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 187.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 186.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 186.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 186.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 186.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 186.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 185.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 185.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 185.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 185.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 185.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 184.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 183.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 183.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 181.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 181.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 181.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 181.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 181.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 180.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 180.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 180.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 180.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 179.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 179.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 178.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 178.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 178.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 177.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 177.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 176.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 176.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 176.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 175.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 174.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 173.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 172.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 172.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 171.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 171.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 171.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 170.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 170.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 170.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 169.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 169.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 169.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 168.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 168.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 168.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 167.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 166.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 166.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 166.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 166.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 165.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 164.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 164.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 163.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 163.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 163.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 163.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 162.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 162.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 162.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 162.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 162.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 161.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 161.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 161.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 160.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 160.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 160.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 159.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 159.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 159.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 158.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 158.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 158.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 158.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 158.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 157.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 157.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 157.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 156.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 156.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 156.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 155.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 155.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 155.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 154.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 153.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 152.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 151.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 151.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 151.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 150.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 150.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 148.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 147.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 147.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 147.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 147.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 147.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 147.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 146.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 146.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 146.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 146.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 145.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 145.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 145.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 142.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 142.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 141.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 141.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 141.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 141.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 140.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 138.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 138.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 138.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 137.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 136.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 135.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 135.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 135.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 135.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 134.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 134.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 133.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 133.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 133.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 133.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 133.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 129.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 129.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 129.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 128.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 128.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 128.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 128.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 127.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 127.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 126.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 125.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 124.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 124.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 124.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 123.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 122.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 121.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 121.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 121.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 121.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 120.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 120.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 120.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 119.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 113.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 111.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 110.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 211.9
FF:10164-103B2 76 years, female 211.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.3
Pig sample Sample description nTPM
Caudate
nTPM: 145.3
Samples: 4

Max nTPM: 173.2
Min nTPM: 132.5
Sample A Female 138.1
Sample B Female 137.4
Sample C Male 173.2
Sample D Male 132.5

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