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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:260.6 nTPM
FANTOM5:309.0 Scaled Tags Per Million
Pig:464.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB000063Antibody CAB073539
Glial cells HighNot detected
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 260.6
Samples: 246

Max nTPM: 592.1
Min nTPM: 61.7
Std nTPM: 116.4
Median nTPM: 261.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 592.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 582.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 565.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 522.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 506.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 496.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 474.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 471.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 470.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 465.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 463.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 463.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 458.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 454.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 454.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 453.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 452.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 442.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 441.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 439.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 438.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 438.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 435.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 430.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 427.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 422.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 422.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 416.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 414.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 409.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 408.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 408.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 407.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 402.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 400.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 397.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 395.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 394.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 393.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 383.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 374.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 373.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 373.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 372.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 369.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 368.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 364.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 358.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 358.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 356.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 356.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 355.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 352.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 349.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 349.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 348.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 345.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 342.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 341.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 340.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 339.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 336.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 334.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 334.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 333.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 330.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 330.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 329.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 329.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 327.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 327.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 326.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 324.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 323.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 323.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 322.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 320.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 319.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 317.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 313.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 311.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 307.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 306.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 304.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 304.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 303.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 303.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 302.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 302.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 301.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 301.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 299.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 297.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 296.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 296.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 294.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 292.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 291.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 290.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 290.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 288.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 287.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 286.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 286.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 285.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 284.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 283.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 282.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 282.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 281.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 280.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 278.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 276.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 275.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 273.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 272.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 271.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 268.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 267.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 267.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 263.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 262.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 262.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 259.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 258.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 255.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 253.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 250.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 250.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 248.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 248.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 247.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 244.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 242.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 240.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 239.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 238.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 237.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 236.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 235.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 233.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 230.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 228.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 227.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 226.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 226.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 226.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 224.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 219.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 218.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 217.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 216.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 215.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 215.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 207.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 206.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 205.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 205.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 205.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 200.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 198.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 198.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 196.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 193.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 187.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 187.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 187.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 186.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 186.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 184.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 184.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 184.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 180.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 180.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 179.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 179.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 177.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 177.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 176.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 175.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 174.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 171.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 165.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 164.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 160.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 158.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 156.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 156.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 155.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 151.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 145.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 144.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 143.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 142.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 140.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 137.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 134.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 130.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 129.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 128.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 128.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 127.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 126.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 125.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 124.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 121.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 121.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 121.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 120.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 120.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 118.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 116.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 116.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 114.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 114.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 114.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 112.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 110.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 109.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 109.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 108.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 108.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 108.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 107.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 106.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 105.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 104.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 103.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 101.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 100.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 99.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 99.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 99.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 95.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 94.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 92.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 91.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 83.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 83.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 73.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 71.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 66.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 61.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 309.0
FF:10164-103B2 76 years, female 309.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

464.4
Pig sample Sample description nTPM
Caudate
nTPM: 464.4
Samples: 4

Max nTPM: 553.7
Min nTPM: 352.0
Sample A Female 352.0
Sample B Female 505.4
Sample C Male 553.7
Sample D Male 446.3

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