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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:90.6 nTPM
FANTOM5:162.6 Scaled Tags Per Million
Pig:91.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031619
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 90.6
Samples: 246

Max nTPM: 162.5
Min nTPM: 27.6
Std nTPM: 18.0
Median nTPM: 89.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 162.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 141.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 135.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 134.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 132.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 124.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 124.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 124.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 123.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 123.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 122.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 122.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 120.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 119.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 119.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 118.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 118.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 116.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 116.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 115.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 114.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 114.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 113.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 113.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 112.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 112.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 112.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 112.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 111.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 111.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 111.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 110.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 110.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 110.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 110.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 109.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 109.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 109.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 108.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 108.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 108.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 107.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 106.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 106.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 104.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 104.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 104.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 103.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 103.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 102.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 102.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 102.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 102.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 101.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 101.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 101.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 101.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 100.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 100.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 100.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 99.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 99.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 99.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 99.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 99.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 99.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 99.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 98.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 98.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 98.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 98.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 97.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 97.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 96.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 96.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 96.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 96.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 96.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 96.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 95.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 95.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 95.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 95.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 95.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 95.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 95.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 94.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 94.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 94.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 94.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 94.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 94.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 94.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 94.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 94.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 94.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 94.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 93.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 93.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 93.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 93.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 92.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 92.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 92.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 92.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 92.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 91.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 91.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 91.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 91.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 91.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 91.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 90.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 90.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 90.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 90.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 90.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 89.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 89.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 89.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 89.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 88.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 88.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 88.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 88.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 87.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 87.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 87.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 87.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 87.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 87.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 87.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 87.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 87.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 87.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 86.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 86.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 86.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 86.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 86.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 86.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 85.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 85.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 85.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 85.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 85.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 85.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 85.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 85.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 84.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 84.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 84.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 84.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 84.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 84.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 84.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 84.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 84.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 83.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 83.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 82.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 82.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 82.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 82.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 82.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 82.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 82.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 82.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 82.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 82.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 81.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 81.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 80.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 80.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 80.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 80.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 80.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 79.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 79.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 79.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 79.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 78.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 78.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 77.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 77.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 76.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 76.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 76.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 76.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 76.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 75.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 75.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 75.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 74.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 74.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 74.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 73.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 73.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 73.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 73.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 73.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 72.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 72.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 71.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 71.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 71.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 70.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 70.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 70.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 70.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 70.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 68.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 68.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 68.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 68.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 68.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 66.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 65.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 65.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 65.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 65.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 64.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 64.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 64.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 62.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 61.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 61.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 61.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 60.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 60.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 58.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 57.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 55.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 53.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 51.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 162.6
FF:10164-103B2 76 years, female 162.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.8
Pig sample Sample description nTPM
Caudate
nTPM: 91.8
Samples: 4

Max nTPM: 106.6
Min nTPM: 79.4
Sample A Female 79.4
Sample B Female 97.7
Sample C Male 106.6
Sample D Male 83.6

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