We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
WASF1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • WASF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:78.6 nTPM
FANTOM5:241.1 Scaled Tags Per Million
Pig:168.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004105Antibody CAB022161
Glial cells Not detectedLow
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 78.6
Samples: 246

Max nTPM: 245.6
Min nTPM: 6.4
Std nTPM: 46.2
Median nTPM: 77.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 245.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 172.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 171.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 170.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 168.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 166.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 165.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 163.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 162.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 162.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 161.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 158.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 155.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 152.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 151.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 150.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 150.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 149.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 148.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 148.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 147.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 147.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 147.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 145.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 145.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 144.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 142.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 139.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 138.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 138.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 137.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 135.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 135.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 135.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 134.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 134.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 132.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 132.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 132.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 129.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 127.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 127.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 127.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 127.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 126.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 125.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 124.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 123.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 120.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 119.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 118.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 117.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 116.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 115.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 114.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 114.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 113.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 113.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 112.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 112.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 112.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 111.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 111.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 110.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 109.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 109.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 109.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 108.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 108.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 107.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 105.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 103.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 103.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 102.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 101.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 101.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 100.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 100.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 99.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 99.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 99.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 98.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 97.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 97.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 97.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 97.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 96.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 96.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 96.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 96.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 95.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 95.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 95.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 94.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 93.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 93.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 93.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 91.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 91.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 90.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 90.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 89.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 89.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 89.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 88.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 88.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 87.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 87.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 84.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 83.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 83.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 83.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 83.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 82.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 81.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 81.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 79.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 77.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 76.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 76.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 74.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 73.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 73.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 72.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 71.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 70.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 70.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 70.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 69.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 69.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 69.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 68.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 67.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 67.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 67.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 66.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 65.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 63.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 63.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 63.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 61.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 60.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 60.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 60.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 58.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 57.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 57.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 57.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 56.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 56.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 56.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 53.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 52.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 51.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 50.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 49.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 49.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 49.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 48.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 48.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 48.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 46.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 46.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 44.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 44.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 43.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 42.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 42.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 42.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 41.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 41.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 40.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 40.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 40.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 39.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 37.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 37.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 37.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 36.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 35.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 34.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 34.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 33.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 33.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 33.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 31.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 30.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 30.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 28.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 28.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 27.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 27.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 27.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 26.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 26.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 26.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 25.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 25.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 25.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 25.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 25.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 24.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 24.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 23.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 21.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 21.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 20.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 20.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 19.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 19.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 18.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 17.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 16.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 15.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 14.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 14.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 13.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 13.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 11.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 11.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 7.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 6.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 6.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 241.1
FF:10164-103B2 76 years, female 241.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.8
Pig sample Sample description nTPM
Caudate
nTPM: 168.8
Samples: 4

Max nTPM: 197.5
Min nTPM: 156.6
Sample A Female 156.6
Sample B Female 157.1
Sample C Male 197.5
Sample D Male 163.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org