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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

62.647
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:138.8 nTPM
GTEx:99.0 nTPM
FANTOM5:345.4 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004105Antibody CAB022161
Glial cells Not detectedMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA004105
Hippocampal formation mean intensity 62.647
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 36.965
Molecular layer of the dentate gyrus 41.287
Granular dentate gyrus 27.189
CA1 - oriens layer 61.005
CA1 - pyramidal layer 41.666
CA1 - radiatum layer 60.449
CA2 - oriens layer 60.656
CA2 - pyramidal layer 42.815
CA2 - radiatum layer 62.647
CA3 - oriens layer 44.087
CA3 - pyramidal layer 24.092
CA3 - radiatum layer 54.180
Stratum lucidum 46.261
Lacunosum moleculare 48.940
Subiculum 34.670

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.8
Sample id Sample description nTPM
Hippocampus
nTPM: 138.8
2621 Female, age 67, right hemisphere 165.1
1898 Male, age 80, left hemisphere 162.8
1855 Male, age 76, left hemisphere 156.1
1911 Female, age 85, right hemisphere 136.8
2148 Female, age 91, left hemisphere 132.7
2529 Female, age 94, left hemisphere 79.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 99.0
Samples: 197

Max nTPM: 313.4
Min nTPM: 13.1
Std nTPM: 64.5
Median nTPM: 87.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 313.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 270.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 267.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 259.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 258.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 255.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 249.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 247.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 241.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 237.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 229.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 226.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 218.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 218.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 217.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 216.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 215.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 206.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 203.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 200.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 195.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 187.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 184.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 182.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 181.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 179.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 179.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 179.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 177.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 176.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 173.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 172.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 166.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 163.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 160.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 154.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 154.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 153.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 152.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 152.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 149.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 147.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 144.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 141.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 135.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 133.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 132.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 132.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 131.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 130.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 130.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 130.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 128.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 122.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 120.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 118.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 117.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 117.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 117.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 117.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 115.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 114.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 113.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 113.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 113.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 111.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 111.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 111.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 110.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 109.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 108.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 108.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 107.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 107.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 107.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 106.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 105.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 105.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 103.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 102.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 101.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 98.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 97.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 97.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 96.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 94.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 93.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 93.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 92.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 92.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 90.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 90.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 90.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 89.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 89.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 88.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 88.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 87.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 87.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 86.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 86.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 84.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 83.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 82.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 82.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 81.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 80.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 79.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 79.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 78.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 77.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 77.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 75.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 74.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 73.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 71.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 71.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 71.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 69.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 69.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 69.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 68.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 68.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 67.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 67.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 67.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 66.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 65.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 65.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 64.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 61.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 59.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 58.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 57.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 56.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 56.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 52.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 52.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 52.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 50.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 48.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 48.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 47.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 46.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 45.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 45.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 44.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 43.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 42.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 42.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 42.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 42.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 42.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 42.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 42.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 41.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 41.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 41.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 40.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 38.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 38.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 37.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 35.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 35.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 34.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 34.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 33.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 33.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 33.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 32.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 32.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 31.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 31.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 30.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 30.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 30.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 30.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 29.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 27.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 27.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 27.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 26.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 24.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 24.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 24.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 22.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 21.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 20.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 18.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 17.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 16.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 15.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 15.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 13.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 13.1
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

345.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 345.4
FF:10169-103B7 60 years, female 544.2
FF:10153-102I9 76 years, female 146.6

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