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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:799.6 nTPM
FANTOM5:311.2 Scaled Tags Per Million
Pig:258.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006124
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

799.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 799.6
Samples: 246

Max nTPM: 2333.1
Min nTPM: 328.0
Std nTPM: 279.1
Median nTPM: 734.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2333.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2113.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1935.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1705.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1700.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1534.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1509.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1502.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1493.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1377.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1350.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1349.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1336.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1273.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1240.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1206.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1174.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1160.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1154.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1152.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1120.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1090.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1087.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1077.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1077.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1077.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1070.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1070.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1064.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1055.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1041.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1040.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1036.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1035.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1031.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1028.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1021.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1017.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1011.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1010.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1004.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1000.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 992.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 991.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 987.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 987.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 986.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 983.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 978.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 978.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 976.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 973.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 972.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 970.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 960.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 959.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 957.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 952.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 952.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 945.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 941.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 939.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 939.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 936.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 935.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 932.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 928.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 925.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 918.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 912.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 891.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 890.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 884.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 881.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 879.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 875.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 874.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 868.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 865.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 863.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 862.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 856.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 850.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 845.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 843.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 838.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 835.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 830.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 827.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 826.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 822.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 809.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 808.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 808.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 802.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 800.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 794.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 793.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 793.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 793.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 791.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 791.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 785.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 785.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 785.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 783.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 782.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 781.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 781.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 772.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 772.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 772.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 769.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 766.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 761.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 758.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 756.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 745.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 739.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 736.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 736.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 735.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 734.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 734.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 733.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 730.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 729.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 729.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 727.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 725.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 725.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 723.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 721.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 713.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 711.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 711.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 709.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 708.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 704.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 703.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 701.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 701.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 699.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 698.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 698.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 695.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 695.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 694.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 693.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 693.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 691.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 686.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 684.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 682.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 678.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 676.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 675.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 667.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 664.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 660.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 654.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 653.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 653.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 649.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 646.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 646.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 646.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 643.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 641.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 640.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 640.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 639.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 638.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 633.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 632.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 632.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 631.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 631.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 627.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 627.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 624.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 622.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 619.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 618.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 616.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 614.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 609.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 607.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 602.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 601.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 599.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 598.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 594.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 593.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 592.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 589.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 588.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 587.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 586.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 585.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 585.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 581.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 578.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 571.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 568.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 567.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 567.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 566.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 560.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 557.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 554.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 544.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 544.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 543.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 538.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 536.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 532.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 527.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 526.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 525.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 524.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 524.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 518.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 518.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 513.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 511.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 511.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 506.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 506.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 504.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 502.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 498.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 486.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 484.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 483.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 480.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 465.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 464.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 463.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 462.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 459.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 451.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 433.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 421.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 415.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 328.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

311.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 311.2
FF:10164-103B2 76 years, female 311.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.3
Pig sample Sample description nTPM
Caudate
nTPM: 258.3
Samples: 4

Max nTPM: 274.7
Min nTPM: 236.6
Sample A Female 256.6
Sample B Female 265.2
Sample C Male 274.7
Sample D Male 236.6

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