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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:70.8 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:69.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051452Antibody HPA056940
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 70.8
Samples: 246

Max nTPM: 126.4
Min nTPM: 20.6
Std nTPM: 24.3
Median nTPM: 69.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 126.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 123.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 123.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 123.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 122.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 119.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 118.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 116.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 115.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 113.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 113.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 110.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 110.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 109.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 109.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 109.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 108.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 108.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 107.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 106.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 105.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 105.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 104.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 104.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 103.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 103.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 103.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 103.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 102.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 102.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 102.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 102.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 101.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 101.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 101.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 101.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 101.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 100.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 99.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 98.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 98.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 98.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 98.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 98.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 98.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 98.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 97.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 97.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 96.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 96.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 96.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 95.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 95.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 95.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 95.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 94.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 94.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 93.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 92.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 92.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 91.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 91.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 90.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 90.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 90.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 90.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 89.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 88.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 87.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 87.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 86.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 84.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 84.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 84.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 84.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 83.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 83.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 83.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 83.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 82.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 82.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 81.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 80.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 79.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 79.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 79.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 78.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 78.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 78.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 77.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 77.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 77.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 77.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 76.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 76.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 76.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 76.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 76.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 75.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 75.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 75.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 74.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 73.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 73.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 73.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 73.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 73.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 73.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 73.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 72.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 72.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 72.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 72.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 71.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 71.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 69.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 69.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 69.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 69.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 69.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 68.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 67.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 67.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 67.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 66.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 66.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 65.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 65.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 65.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 65.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 64.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 64.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 64.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 63.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 63.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 62.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 62.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 61.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 61.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 61.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 61.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 60.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 60.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 60.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 60.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 60.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 60.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 59.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 59.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 59.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 58.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 58.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 57.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 57.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 57.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 57.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 56.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 56.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 56.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 56.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 56.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 55.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 55.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 55.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 55.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 54.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 53.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 53.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 53.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 52.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 52.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 52.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 52.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 51.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 51.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 50.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 50.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 50.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 50.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 49.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 49.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 48.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 48.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 48.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 47.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 47.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 47.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 47.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 47.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 47.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 46.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 46.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 46.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 46.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 45.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 45.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 45.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 45.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 45.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 44.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 44.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 44.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 44.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 43.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 43.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 42.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 42.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 42.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 42.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 40.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 40.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 40.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 40.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 39.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 39.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 39.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 39.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 38.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 38.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 38.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 37.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 37.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 37.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 37.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 36.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 35.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 35.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 34.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 34.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 34.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 34.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 32.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 30.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 26.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 20.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.7
FF:10164-103B2 76 years, female 103.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.9
Pig sample Sample description nTPM
Caudate
nTPM: 70.0
Samples: 4

Max nTPM: 88.5
Min nTPM: 58.9
Sample A Female 58.9
Sample B Female 69.6
Sample C Male 88.5
Sample D Male 62.9

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