PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:64.4 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:29.5 nTPM
Allen mouse:1.6 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 64.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 57.6
1984 Male, age 76, both hemispheres 70.0
2188 Female, age 91, both hemispheres 58.4
2090 Male, age 80, both hemispheres 54.2
2301 Female, age 85, both hemispheres 47.8
Area postrema
nTPM: 38.3
2306 Male, age 80, both hemispheres 44.2
2054 Male, age 76, both hemispheres 39.5
2799 Male, age 61, both hemispheres 31.2
Dorsal cochlear nucleus
nTPM: 48.7
2058 Male, age 76, both hemispheres 51.9
2187 Female, age 91, both hemispheres 51.0
2378 Male, age 80, both hemispheres 47.4
2370 Male, age 61, both hemispheres 47.2
2802 Male, age 74, right hemisphere 45.9
Dorsal medullary reticular nucleus
nTPM: 52.0
2040 Female, age 85, both hemispheres 54.8
2088 Male, age 76, both hemispheres 53.3
2373 Male, age 61, both hemispheres 47.9
Dorsal motor vagal complex
nTPM: 46.0
2133 Female, age 91, both hemispheres 57.5
2000 Male, age 74, unknown 52.5
2807 Female, age 85, both hemispheres 50.2
2844 Male, age 55, unknown 49.1
2813 Female, age 72, unknown 44.5
2185 Male, age 76, both hemispheres 40.7
2643 Male, age 74, both hemispheres 36.6
2797 Male, age 61, both hemispheres 36.5
Dorsal tegmental nucleus
nTPM: 46.8
2358 Male, age 61, both hemispheres 48.8
2083 Male, age 80, both hemispheres 47.7
1936 Male, age 76, left hemisphere 46.9
2326 Male, age 74, both hemispheres 43.9
Dorsolateral tegmental area
nTPM: 48.9
2337 Male, age 61, both hemispheres 56.0
2141 Male, age 76, both hemispheres 51.0
2360 Male, age 74, both hemispheres 46.4
2654 Male, age 80, both hemispheres 45.8
2751 Female, age 85, both hemispheres 45.2
Gigantocellular reticular nuclei, medullary
nTPM: 51.6
2462 Male, age 74, both hemispheres 57.7
2310 Male, age 80, both hemispheres 57.2
2387 Female, age 91, both hemispheres 57.2
1876 Female, age 85, both hemispheres 48.5
2022 Male, age 76, right hemisphere 45.9
2314 Male, age 61, both hemispheres 42.9
Gigantocellular reticular nuclei, pars
nTPM: 57.8
2168 Male, age 76, both hemispheres 67.8
2330 Male, age 80, both hemispheres 57.2
2084 Female, age 85, both hemispheres 56.9
2706 Male, age 80, both hemispheres 56.6
2336 Male, age 61, both hemispheres 50.4
Inferior olive
nTPM: 42.1
2379 Male, age 80, both hemispheres 45.6
2628 Female, age 91, both hemispheres 43.1
2563 Male, age 74, both hemispheres 42.6
2178 Male, age 61, both hemispheres 40.1
2085 Female, age 85, both hemispheres 39.1
Kolliker-Fuse nucleus
nTPM: 46.9
2163 Male, age 80, both hemispheres 56.9
2793 Female, age 91, left hemisphere 54.6
2315 Male, age 76, right hemisphere 29.2
Lateral lemniscal nuclei
nTPM: 61.6
2169 Male, age 76, both hemispheres 63.6
2320 Female, age 91, left hemisphere 62.2
2746 Female, age 85, left hemisphere 62.2
2453 Male, age 74, right hemisphere 60.9
2036 Male, age 80, both hemispheres 59.3
Lateral medullary reticular nucleus
nTPM: 49.7
2305 Male, age 74, both hemispheres 60.0
2044 Male, age 76, both hemispheres 58.7
2852 Male, age 80, both hemispheres 49.0
2190 Female, age 85, both hemispheres 44.5
2804 Female, age 91, both hemispheres 43.3
2374 Male, age 61, both hemispheres 42.6
Lateral parabrachial nucleus
nTPM: 48.7
2139 Female, age 85, right hemisphere 56.9
2790 Male, age 61, both hemispheres 56.0
2013 Male, age 80, both hemispheres 50.4
2792 Male, age 76, both hemispheres 31.4
Lateral vestibular nucleus
nTPM: 53.3
2184 Male, age 76, both hemispheres 61.2
2311 Male, age 80, both hemispheres 45.3
Locus coeruleus
nTPM: 52.6
2014 Male, age 55, unknown 57.8
2162 Male, age 80, both hemispheres 56.7
2788 Male, age 74, unknown 52.6
2123 Female, age 91, both hemispheres 52.1
1980 Male, age 76, both hemispheres 52.0
2720 Male, age 74, both hemispheres 48.7
2317 Female, age 72, unknown 48.4
Medial olivary nucleus
nTPM: 40.4
2851 Male, age 80, both hemispheres 43.7
2138 Female, age 91, both hemispheres 41.0
1943 Male, age 61, both hemispheres 40.7
1962 Male, age 76, both hemispheres 36.1
Medial parabrachial nucleus
nTPM: 50.7
2463 Female, age 85, right hemisphere 57.2
2156 Male, age 61, both hemispheres 52.8
2854 Male, age 80, both hemispheres 49.0
2786 Male, age 76, both hemispheres 48.8
2170 Female, age 91, both hemispheres 45.8
Medial periolivary nuclei
nTPM: 64.0
2171 Female, age 85, both hemispheres 70.5
2063 Male, age 76, both hemispheres 66.3
2458 Female, age 91, both hemispheres 65.2
2081 Male, age 80, both hemispheres 61.7
2791 Male, age 74, right hemisphere 56.4
Medial vestibular nucleus
nTPM: 53.6
2134 Male, age 76, both hemispheres 67.1
2093 Male, age 80, both hemispheres 58.1
2624 Male, age 61, both hemispheres 51.6
2801 Male, age 74, both hemispheres 49.4
2803 Female, age 91, both hemispheres 48.8
2743 Female, age 85, both hemispheres 46.8
Motor facial nucleus
nTPM: 59.0
2062 Male, age 76, both hemispheres 71.1
2365 Male, age 74, right hemisphere 62.6
2327 Male, age 80, both hemispheres 61.8
2126 Male, age 61, both hemispheres 56.2
2697 Female, age 85, both hemispheres 54.1
2795 Female, age 91, both hemispheres 48.2
Motor hypoglossal nucleus
nTPM: 52.6
2132 Female, age 85, both hemispheres 58.2
2182 Male, age 80, both hemispheres 57.0
2125 Female, age 91, both hemispheres 52.9
2277 Male, age 76, both hemispheres 47.8
2461 Male, age 61, both hemispheres 47.3
Motor trigeminal nucleus
nTPM: 55.8
2321 Female, age 91, both hemispheres 61.4
2079 Male, age 80, both hemispheres 60.6
2560 Male, age 74, both hemispheres 57.7
2335 Male, age 61, both hemispheres 51.5
2309 Male, age 76, both hemispheres 47.8
Nuclei of the trapezoid body
nTPM: 63.9
2735 Female, age 85, both hemispheres 68.7
2159 Male, age 61, both hemispheres 66.0
2368 Female, age 91, both hemispheres 62.4
1983 Male, age 76, both hemispheres 62.0
2166 Male, age 80, both hemispheres 60.5
Nucleus ambiguus
nTPM: 48.5
2096 Female, age 85, both hemispheres 60.8
2071 Male, age 76, both hemispheres 36.1
Nucleus cuneatus
nTPM: 53.0
2131 Male, age 76, both hemispheres 70.0
2100 Male, age 76, both hemispheres 65.2
2381 Male, age 80, both hemispheres 52.8
2805 Female, age 91, both hemispheres 51.3
2380 Male, age 80, both hemispheres 49.2
2376 Male, age 61, both hemispheres 48.9
2808 Female, age 85, both hemispheres 48.4
2564 Male, age 74, both hemispheres 46.0
2562 Male, age 61, both hemispheres 45.6
Nucleus gracilis
nTPM: 45.9
2382 Male, age 80, both hemispheres 51.4
2627 Male, age 74, both hemispheres 44.2
2299 Female, age 85, both hemispheres 42.2
Nucleus raphe magnus
nTPM: 62.7
2172 Female, age 85, both hemispheres 71.2
2160 Male, age 61, both hemispheres 68.8
2459 Female, age 91, both hemispheres 61.2
2328 Male, age 80, both hemispheres 60.5
2455 Male, age 74, both hemispheres 59.1
2051 Male, age 76, both hemispheres 55.5
Nucleus raphe obscurus
nTPM: 40.5
2800 Male, age 61, midline 47.9
2845 Female, age 85, midline 42.8
2142 Male, age 76, midline 30.8
Nucleus raphe pallidus
nTPM: 41.2
2183 Male, age 80, midline 49.2
1924 Male, age 61, midline 41.6
2145 Male, age 76, midline 32.6
Nucleus tractus solitarii
nTPM: 47.3
2656 Male, age 76, both hemispheres 50.3
2144 Female, age 91, right hemisphere 47.5
2307 Male, age 80, both hemispheres 47.1
2191 Female, age 85, both hemispheres 44.4
Paramedian reticular nucleus
nTPM: 54.0
2050 Female, age 85, both hemispheres 62.3
2057 Male, age 80, both hemispheres 57.6
2313 Male, age 61, both hemispheres 53.6
2052 Male, age 76, both hemispheres 42.4
Parvicellular reticular nuclei
nTPM: 57.1
2558 Male, age 74, both hemispheres 68.5
2095 Male, age 76, both hemispheres 52.9
2119 Male, age 80, both hemispheres 50.0
Parvicellular reticular nuclei, medullary
nTPM: 52.4
2091 Female, age 85, both hemispheres 54.5
2189 Female, age 91, both hemispheres 51.9
2181 Male, age 80, left hemisphere 51.0
Pedunculopontine tegmental nucleus
nTPM: 48.9
2338 Male, age 61, both hemispheres 53.1
1921 Female, age 85, both hemispheres 46.8
2334 Male, age 80, both hemispheres 46.8
Peritrigeminal nucleus
nTPM: 49.7
2179 Male, age 61, both hemispheres 51.4
2136 Male, age 76, both hemispheres 50.1
2067 Female, age 85, both hemispheres 47.7
Pontine nuclei
nTPM: 64.4
2727 Male, age 61, right hemisphere 71.0
1863 Male, age 55, unknown 67.5
1968 Male, age 76, left hemisphere 65.4
2454 Male, age 74, left hemisphere 64.5
2109 Female, age 72, unknown 63.7
2115 Male, age 80, left hemisphere 62.6
2787 Female, age 85, both hemispheres 62.3
2319 Female, age 91, both hemispheres 58.1
Pontine raphe nucleus
nTPM: 52.4
2122 Female, age 85, midline 57.8
2853 Male, age 76, midline 46.9
Posteroventral cochlear nucleus
nTPM: 51.4
2135 Female, age 91, both hemispheres 58.1
2752 Female, age 85, both hemispheres 55.8
2341 Male, age 80, both hemispheres 50.2
2070 Male, age 76, both hemispheres 47.5
2371 Male, age 61, both hemispheres 45.4
Prepositus hypoglossal nucleus
nTPM: 49.1
2855 Female, age 85, right hemisphere 52.3
2086 Male, age 80, both hemispheres 45.9
Principal sensory trigeminal nucleus
nTPM: 61.0
2158 Male, age 61, both hemispheres 70.1
2008 Male, age 80, left hemisphere 62.5
2367 Female, age 91, left hemisphere 60.2
2324 Male, age 76, both hemispheres 51.4
Reticular pontine nucleus, caudal
nTPM: 57.9
2332 Male, age 80, right hemisphere 66.4
2559 Male, age 74, both hemispheres 59.8
2092 Male, age 76, both hemispheres 53.3
2457 Female, age 91, both hemispheres 52.1
Reticular pontine nucleus, oral
nTPM: 52.9
2361 Male, age 74, both hemispheres 62.6
2366 Female, age 91, both hemispheres 59.7
2012 Female, age 85, both hemispheres 50.4
1939 Male, age 80, both hemispheres 46.7
2167 Male, age 76, both hemispheres 44.8
Reticulotegmental nucleus
nTPM: 53.9
2452 Male, age 74, both hemispheres 56.7
2325 Male, age 76, both hemispheres 55.5
2333 Male, age 80, both hemispheres 52.8
2322 Female, age 91, both hemispheres 50.4
Spinal trigeminal nucleus, caudal
nTPM: 50.9
2447 Male, age 76, both hemispheres 61.3
2390 Female, age 91, both hemispheres 56.2
2308 Male, age 80, both hemispheres 48.0
2312 Male, age 61, both hemispheres 45.5
2642 Male, age 74, both hemispheres 43.3
Spinal trigeminal nucleus, interpolar
nTPM: 56.1
2066 Male, age 76, right hemisphere 73.3
2625 Male, age 61, both hemispheres 60.5
2386 Female, age 85, both hemispheres 50.7
2389 Female, age 91, both hemispheres 49.6
2033 Male, age 80, both hemispheres 46.1
Spinal trigeminal nucleus, oral
nTPM: 55.6
2737 Female, age 85, both hemispheres 57.1
2164 Male, age 80, both hemispheres 56.5
1978 Male, age 76, both hemispheres 53.1
Spinal vestibular nucleus
nTPM: 49.0
2186 Female, age 91, both hemispheres 54.5
2384 Male, age 74, both hemispheres 51.3
2780 Male, age 80, both hemispheres 50.2
2748 Male, age 76, both hemispheres 47.1
2806 Female, age 85, both hemispheres 46.7
2796 Male, age 61, both hemispheres 43.8
Subcoeruleus area
nTPM: 50.9
2089 Male, age 76, left hemisphere 60.7
2451 Male, age 74, both hemispheres 53.5
1958 Male, age 80, both hemispheres 50.0
2323 Female, age 91, left hemisphere 48.1
2369 Female, age 85, left hemisphere 42.3
Superior olive
nTPM: 58.4
2329 Male, age 80, right hemisphere 62.1
2364 Male, age 74, right hemisphere 61.3
1875 Female, age 85, both hemispheres 61.2
2561 Female, age 91, both hemispheres 60.9
2020 Male, age 76, both hemispheres 46.5
Superior vestibular nucleus
nTPM: 41.8
2015 Male, age 80, both hemispheres 45.5
2061 Male, age 76, both hemispheres 41.9
2383 Male, age 74, both hemispheres 38.2
Ventral medullary reticular nucleus
nTPM: 45.9
2060 Male, age 76, both hemispheres 47.9
2372 Male, age 61, both hemispheres 43.9
Ventral periolivary nuclei
nTPM: 58.6
2794 Female, age 91, left hemisphere 63.9
2130 Female, age 85, both hemispheres 63.1
2165 Male, age 80, both hemispheres 59.6
2023 Male, age 76, both hemispheres 48.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 51.5
2741 Female, age 85, both hemispheres 56.1
1986 Male, age 76, both hemispheres 55.5
2118 Male, age 80, both hemispheres 53.4
2302 Female, age 91, both hemispheres 49.0
2180 Male, age 61, both hemispheres 43.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 55.9
2449 Male, age 74, both hemispheres 64.5
2456 Female, age 91, both hemispheres 58.3
2161 Male, age 80, both hemispheres 55.7
2840 Female, age 85, both hemispheres 54.1
1959 Male, age 76, both hemispheres 53.3
2359 Male, age 61, both hemispheres 49.3

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 52.1
FF:10165-103B3 76 years, female 61.0
FF:10182-103D2 60 years, female 43.3
Medulla oblongata
Scaled Tags Per Million: 42.1
FF:10155-103A2 76 years, female 52.1
FF:10038-101F2 18-64 years, mixed 37.5
FF:10174-103C3 60 years, female 36.6
Pons
Scaled Tags Per Million: 60.3
FF:10033-101E6 18-54 years, mixed 60.3

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 21.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 21.6
Samples: 4

Max nTPM: 24.7
Min nTPM: 15.5
Sample A Female 21.8
Sample B Female 24.5
Sample C Male 24.7
Sample D Male 15.5
Pons
nTPM: 21.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 20.0
Sample A Female 20.3
Sample B Female 22.1
Sample C Male 20.0
Sample D Male 23.5

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 29.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 29.5
Samples: 4

Max nTPM: 31.5
Min nTPM: 27.1
Sample A Male 29.0
Sample B Male 30.4
Sample C Female 31.5
Sample D Female 27.1

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.6
69236628 Antisense, RP_050329_04_A11, Mouse strain C57BL/6J (56 days, male) 2.0
70795454 Antisense, RP_050712_01_F03, Mouse strain C57BL/6J (56 days, male) 1.2
Pons
Expression energy: 1.0
69236628 Antisense, RP_050329_04_A11, Mouse strain C57BL/6J (56 days, male) 1.3
70795454 Antisense, RP_050712_01_F03, Mouse strain C57BL/6J (56 days, male) 0.6

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