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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:49.3 nTPM
GTEx:69.9 nTPM
FANTOM5:127.4 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027101Antibody HPA027135Antibody HPA027317
Glial cells Not detectedLowNot detected
Neuronal cells Not detectedNot detectedLow







HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.3
Sample id Sample description nTPM
Hippocampus
nTPM: 49.3
1898 Male, age 80, left hemisphere 55.9
2529 Female, age 94, left hemisphere 53.3
1855 Male, age 76, left hemisphere 49.9
2148 Female, age 91, left hemisphere 46.7
1911 Female, age 85, right hemisphere 46.5
2621 Female, age 67, right hemisphere 43.6

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 69.9
Samples: 197

Max nTPM: 133.7
Min nTPM: 38.6
Std nTPM: 14.1
Median nTPM: 67.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 133.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 133.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 126.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 110.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 105.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 101.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 99.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 98.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 97.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 95.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 93.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 93.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 91.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 91.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 89.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 88.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 87.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 86.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 86.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 85.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 85.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 85.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 84.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 84.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 84.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 84.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 83.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 83.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 81.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 81.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 80.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 80.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 80.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 80.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 79.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 79.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 79.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 79.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 79.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 78.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 78.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 78.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 78.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 78.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 77.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 77.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 77.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 77.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 76.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 76.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 76.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 76.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 76.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 76.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 75.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 75.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 75.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 75.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 75.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 75.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 74.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 74.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 74.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 73.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 73.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 73.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 73.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 73.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 72.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 72.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 72.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 71.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 71.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 71.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 71.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 71.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 71.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 71.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 71.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 70.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 70.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 70.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 70.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 70.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 70.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 70.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 70.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 70.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 70.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 69.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 69.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 69.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 68.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 68.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 68.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 68.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 68.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 67.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 67.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 67.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 67.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 66.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 66.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 66.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 66.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 65.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 65.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 65.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 65.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 65.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 65.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 65.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 64.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 64.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 64.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 64.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 64.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 64.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 64.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 64.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 64.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 64.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 64.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 64.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 64.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 64.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 64.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 63.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 63.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 63.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 63.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 63.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 63.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 63.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 62.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 62.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 62.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 62.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 62.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 62.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 61.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 61.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 61.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 61.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 61.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 61.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 60.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 60.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 60.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 60.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 60.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 60.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 59.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 59.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 59.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 59.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 59.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 59.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 59.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 59.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 58.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 58.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 58.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 58.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 58.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 58.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 57.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 57.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 57.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 57.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 57.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 57.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 56.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 56.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 56.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 55.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 55.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 55.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 55.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 55.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 55.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 54.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 53.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 53.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 52.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 52.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 52.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 51.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 51.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 50.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 50.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 50.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 48.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 46.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 46.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 44.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 38.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 127.4
FF:10169-103B7 60 years, female 130.8
FF:10153-102I9 76 years, female 123.9

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