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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:355.7 nTPM
FANTOM5:115.9 Scaled Tags Per Million
Pig:185.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004190Antibody CAB005870
Glial cells MediumLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 355.7
Samples: 246

Max nTPM: 771.0
Min nTPM: 218.3
Std nTPM: 82.0
Median nTPM: 338.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 771.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 725.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 720.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 693.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 677.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 589.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 581.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 565.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 515.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 501.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 498.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 497.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 495.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 490.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 482.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 479.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 476.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 472.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 466.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 464.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 463.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 461.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 457.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 450.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 450.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 448.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 437.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 434.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 433.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 431.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 429.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 427.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 427.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 426.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 424.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 424.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 421.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 419.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 417.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 413.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 413.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 410.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 410.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 408.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 406.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 403.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 400.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 400.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 398.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 395.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 394.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 393.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 393.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 393.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 392.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 392.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 390.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 388.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 387.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 386.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 385.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 385.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 385.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 384.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 382.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 380.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 379.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 375.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 375.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 375.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 373.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 373.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 372.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 372.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 370.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 367.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 366.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 366.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 366.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 365.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 365.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 364.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 364.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 363.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 362.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 361.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 361.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 361.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 361.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 361.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 361.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 360.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 360.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 359.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 357.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 357.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 356.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 355.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 354.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 354.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 349.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 349.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 348.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 347.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 347.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 347.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 346.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 346.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 345.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 344.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 344.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 344.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 343.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 343.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 342.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 342.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 342.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 341.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 340.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 340.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 339.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 339.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 338.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 338.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 337.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 337.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 336.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 336.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 336.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 335.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 335.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 335.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 334.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 334.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 333.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 332.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 332.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 331.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 331.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 331.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 331.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 330.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 329.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 328.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 328.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 328.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 327.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 327.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 327.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 326.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 326.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 325.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 325.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 324.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 323.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 323.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 323.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 323.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 322.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 322.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 322.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 322.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 321.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 320.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 319.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 319.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 318.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 318.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 317.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 317.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 317.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 316.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 315.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 315.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 315.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 314.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 314.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 313.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 312.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 311.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 311.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 310.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 310.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 309.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 308.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 308.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 308.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 304.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 304.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 304.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 304.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 304.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 302.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 299.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 299.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 297.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 296.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 296.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 294.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 294.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 294.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 293.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 293.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 292.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 292.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 290.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 290.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 289.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 289.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 288.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 284.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 284.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 284.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 283.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 283.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 283.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 280.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 280.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 278.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 277.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 274.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 273.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 272.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 272.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 272.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 270.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 269.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 264.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 264.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 263.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 262.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 262.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 261.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 261.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 258.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 258.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 251.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 251.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 250.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 248.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 247.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 247.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 245.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 243.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 238.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 218.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 115.9
FF:10164-103B2 76 years, female 115.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.4
Pig sample Sample description nTPM
Caudate
nTPM: 185.4
Samples: 4

Max nTPM: 225.9
Min nTPM: 155.7
Sample A Female 179.1
Sample B Female 180.9
Sample C Male 225.9
Sample D Male 155.7

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