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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:153.6 nTPM
FANTOM5:494.4 Scaled Tags Per Million
Pig:158.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051237Antibody CAB009849
Glial cells LowNot detected
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 153.6
Samples: 246

Max nTPM: 466.6
Min nTPM: 39.9
Std nTPM: 66.7
Median nTPM: 140.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 466.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 408.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 385.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 327.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 325.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 319.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 310.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 300.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 298.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 295.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 291.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 275.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 274.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 271.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 267.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 259.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 258.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 253.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 252.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 252.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 249.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 247.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 246.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 243.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 242.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 241.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 239.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 239.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 235.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 235.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 234.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 231.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 230.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 230.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 223.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 222.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 222.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 221.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 221.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 220.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 217.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 217.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 217.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 217.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 215.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 213.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 212.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 212.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 209.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 209.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 208.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 205.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 203.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 198.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 197.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 193.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 191.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 190.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 189.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 188.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 188.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 187.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 183.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 183.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 183.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 180.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 179.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 178.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 178.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 176.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 175.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 175.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 175.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 174.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 172.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 171.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 170.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 169.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 169.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 168.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 167.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 166.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 166.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 166.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 166.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 165.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 163.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 161.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 161.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 161.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 161.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 160.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 160.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 159.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 158.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 157.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 156.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 156.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 155.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 154.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 154.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 151.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 151.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 150.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 150.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 150.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 149.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 149.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 149.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 149.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 149.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 149.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 148.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 148.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 146.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 146.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 145.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 145.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 143.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 142.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 142.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 141.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 140.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 140.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 140.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 139.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 139.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 139.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 138.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 138.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 138.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 135.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 135.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 134.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 134.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 132.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 132.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 132.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 132.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 131.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 131.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 131.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 131.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 130.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 129.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 129.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 129.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 127.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 126.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 125.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 123.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 123.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 122.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 122.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 122.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 120.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 119.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 117.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 117.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 117.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 116.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 116.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 116.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 116.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 115.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 115.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 114.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 114.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 114.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 114.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 113.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 112.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 111.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 111.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 108.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 107.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 107.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 107.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 106.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 106.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 104.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 103.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 102.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 102.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 102.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 102.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 102.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 102.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 102.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 101.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 101.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 101.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 100.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 100.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 100.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 100.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 100.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 100.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 98.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 96.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 95.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 94.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 94.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 94.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 93.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 93.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 91.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 91.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 91.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 90.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 90.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 90.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 89.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 89.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 89.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 86.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 86.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 84.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 84.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 84.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 83.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 83.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 82.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 81.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 80.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 80.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 79.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 78.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 77.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 77.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 74.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 73.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 72.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 71.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 66.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 57.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 47.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 47.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 45.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 40.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 39.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

494.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 494.4
FF:10164-103B2 76 years, female 494.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.3
Pig sample Sample description nTPM
Caudate
nTPM: 158.4
Samples: 4

Max nTPM: 170.4
Min nTPM: 138.3
Sample A Female 169.4
Sample B Female 155.3
Sample C Male 170.4
Sample D Male 138.3

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