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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:151.6 nTPM
FANTOM5:245.3 Scaled Tags Per Million
Pig:83.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006983Antibody CAB008663
Glial cells MediumHigh
Neuronal cells HighLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 151.6
Samples: 246

Max nTPM: 408.3
Min nTPM: 51.3
Std nTPM: 58.8
Median nTPM: 137.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 408.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 350.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 349.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 313.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 306.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 299.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 294.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 289.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 285.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 282.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 270.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 265.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 261.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 252.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 249.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 248.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 247.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 246.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 246.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 246.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 245.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 245.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 242.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 236.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 231.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 230.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 228.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 226.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 226.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 222.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 222.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 221.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 219.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 219.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 219.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 217.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 215.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 211.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 210.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 209.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 208.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 208.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 207.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 206.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 199.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 197.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 195.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 195.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 195.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 195.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 193.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 192.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 190.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 189.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 187.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 186.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 185.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 184.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 184.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 182.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 181.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 181.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 180.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 179.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 178.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 177.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 176.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 176.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 174.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 173.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 172.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 171.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 170.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 170.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 170.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 169.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 166.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 165.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 165.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 164.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 163.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 163.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 162.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 162.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 162.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 161.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 161.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 160.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 160.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 160.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 159.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 159.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 157.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 157.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 157.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 156.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 156.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 155.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 155.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 155.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 155.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 154.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 154.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 152.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 152.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 152.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 151.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 150.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 149.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 148.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 148.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 147.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 146.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 144.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 144.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 144.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 141.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 138.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 138.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 137.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 137.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 136.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 136.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 136.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 135.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 134.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 133.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 133.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 133.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 132.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 132.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 132.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 131.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 130.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 130.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 130.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 129.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 129.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 129.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 128.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 128.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 127.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 127.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 126.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 125.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 125.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 124.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 124.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 123.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 123.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 123.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 123.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 123.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 122.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 122.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 122.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 121.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 121.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 119.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 119.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 119.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 118.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 118.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 118.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 117.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 116.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 115.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 114.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 114.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 114.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 113.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 112.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 112.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 112.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 111.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 109.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 108.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 108.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 108.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 107.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 107.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 106.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 106.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 105.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 105.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 104.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 104.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 103.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 102.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 102.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 101.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 101.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 101.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 101.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 101.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 100.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 100.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 100.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 100.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 99.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 98.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 98.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 97.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 97.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 95.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 94.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 93.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 93.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 92.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 92.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 92.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 92.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 91.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 90.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 89.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 88.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 87.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 87.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 86.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 86.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 85.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 84.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 83.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 82.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 82.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 78.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 78.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 77.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 74.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 71.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 68.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 67.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 67.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 62.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 55.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 51.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 51.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

245.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 245.3
FF:10164-103B2 76 years, female 245.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.5
Pig sample Sample description nTPM
Caudate
nTPM: 83.5
Samples: 4

Max nTPM: 110.1
Min nTPM: 66.9
Sample A Female 66.9
Sample B Female 76.5
Sample C Male 110.1
Sample D Male 80.6

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