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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:257.4 nTPM
FANTOM5:438.0 Scaled Tags Per Million
Pig:79.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027541
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 257.4
Samples: 246

Max nTPM: 7444.7
Min nTPM: 24.2
Std nTPM: 503.9
Median nTPM: 168.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 7444.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1322.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1279.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1154.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1092.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 962.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 901.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 897.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 882.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 855.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 812.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 773.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 737.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 676.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 602.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 588.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 586.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 573.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 570.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 540.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 487.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 457.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 434.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 427.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 421.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 404.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 395.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 392.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 378.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 373.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 372.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 366.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 363.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 363.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 362.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 356.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 345.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 333.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 333.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 330.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 329.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 327.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 319.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 317.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 313.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 313.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 309.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 308.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 307.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 307.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 298.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 294.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 291.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 275.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 272.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 271.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 268.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 261.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 258.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 256.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 253.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 250.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 250.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 244.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 244.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 244.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 243.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 243.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 242.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 240.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 240.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 236.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 231.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 227.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 225.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 224.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 224.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 223.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 222.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 222.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 221.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 219.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 219.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 216.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 213.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 211.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 210.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 209.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 207.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 205.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 205.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 204.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 204.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 204.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 204.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 203.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 200.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 200.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 200.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 199.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 199.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 198.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 198.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 196.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 195.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 191.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 189.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 189.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 189.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 187.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 187.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 182.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 181.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 181.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 181.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 178.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 175.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 175.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 175.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 170.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 168.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 168.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 168.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 167.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 165.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 165.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 159.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 159.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 157.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 157.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 156.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 154.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 154.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 154.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 152.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 151.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 151.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 149.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 147.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 147.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 147.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 144.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 144.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 143.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 143.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 142.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 141.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 140.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 139.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 139.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 139.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 138.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 138.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 137.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 136.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 136.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 134.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 133.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 133.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 132.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 132.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 131.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 130.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 129.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 128.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 127.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 125.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 124.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 123.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 122.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 121.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 121.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 121.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 121.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 118.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 116.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 115.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 115.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 114.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 112.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 112.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 111.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 111.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 110.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 109.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 109.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 107.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 105.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 101.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 101.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 100.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 99.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 98.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 97.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 96.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 95.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 95.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 95.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 94.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 93.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 92.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 92.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 91.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 89.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 89.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 89.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 88.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 88.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 86.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 83.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 83.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 80.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 79.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 79.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 78.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 77.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 77.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 77.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 76.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 74.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 72.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 71.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 70.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 69.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 65.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 65.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 63.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 59.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 57.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 55.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 54.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 54.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 53.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 52.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 50.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 49.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 48.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 46.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 26.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

438.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 438.0
FF:10164-103B2 76 years, female 438.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
Pig sample Sample description nTPM
Caudate
nTPM: 79.7
Samples: 4

Max nTPM: 86.6
Min nTPM: 72.7
Sample A Female 85.9
Sample B Female 73.5
Sample C Male 86.6
Sample D Male 72.7

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