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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:83.7 nTPM
FANTOM5:157.0 Scaled Tags Per Million
Pig:33.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003239
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 83.7
Samples: 246

Max nTPM: 267.8
Min nTPM: 34.5
Std nTPM: 37.7
Median nTPM: 74.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 267.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 245.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 206.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 178.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 170.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 169.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 169.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 164.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 158.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 155.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 155.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 154.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 154.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 153.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 151.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 148.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 147.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 147.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 146.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 145.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 144.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 144.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 143.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 140.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 138.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 137.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 136.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 135.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 134.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 132.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 130.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 129.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 128.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 128.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 126.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 123.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 123.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 123.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 120.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 119.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 118.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 117.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 116.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 114.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 111.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 110.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 109.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 109.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 108.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 105.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 105.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 105.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 105.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 105.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 104.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 104.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 104.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 102.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 102.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 102.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 102.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 101.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 101.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 101.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 101.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 101.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 101.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 100.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 100.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 100.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 100.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 98.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 97.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 97.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 96.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 96.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 95.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 94.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 94.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 94.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 93.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 93.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 93.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 91.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 91.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 91.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 89.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 89.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 88.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 88.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 88.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 88.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 88.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 88.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 88.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 87.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 87.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 86.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 85.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 85.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 84.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 84.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 83.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 83.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 83.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 82.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 81.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 81.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 81.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 81.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 80.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 79.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 79.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 79.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 79.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 78.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 78.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 78.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 77.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 76.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 75.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 74.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 73.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 73.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 73.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 72.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 72.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 72.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 71.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 71.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 71.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 70.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 70.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 70.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 70.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 68.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 67.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 67.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 67.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 66.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 66.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 65.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 65.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 65.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 65.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 65.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 65.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 64.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 64.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 64.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 64.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 63.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 63.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 62.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 62.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 62.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 62.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 62.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 62.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 61.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 61.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 61.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 60.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 60.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 59.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 59.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 59.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 59.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 59.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 58.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 58.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 58.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 57.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 57.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 57.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 57.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 56.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 56.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 56.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 56.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 55.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 55.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 55.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 54.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 54.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 53.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 52.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 52.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 51.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 51.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 51.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 51.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 50.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 50.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 49.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 49.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 49.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 49.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 48.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 48.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 48.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 48.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 48.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 47.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 47.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 47.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 47.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 47.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 47.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 46.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 46.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 46.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 46.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 46.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 45.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 45.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 45.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 45.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 44.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 44.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 43.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 43.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 43.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 43.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 43.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 42.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 42.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 41.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 41.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 41.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 40.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 40.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 39.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 38.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 36.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 36.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 35.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 34.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 157.0
FF:10164-103B2 76 years, female 157.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.4
Pig sample Sample description nTPM
Caudate
nTPM: 33.4
Samples: 4

Max nTPM: 38.1
Min nTPM: 31.5
Sample A Female 32.1
Sample B Female 31.5
Sample C Male 38.1
Sample D Male 32.0

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