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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:107.7 nTPM
FANTOM5:178.2 Scaled Tags Per Million
Pig:103.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035945Antibody HPA056766Antibody CAB037212
Glial cells Not detectedNot detectedLow
Neuronal cells LowLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 107.7
Samples: 246

Max nTPM: 205.0
Min nTPM: 62.3
Std nTPM: 22.5
Median nTPM: 104.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 205.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 192.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 187.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 186.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 185.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 180.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 176.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 176.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 170.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 167.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 142.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 140.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 140.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 138.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 138.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 137.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 137.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 137.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 136.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 134.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 133.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 133.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 133.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 132.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 131.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 129.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 129.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 129.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 128.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 128.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 127.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 127.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 127.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 126.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 126.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 125.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 125.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 125.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 125.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 125.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 124.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 123.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 122.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 122.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 121.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 121.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 121.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 121.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 121.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 120.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 120.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 120.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 119.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 119.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 119.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 118.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 118.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 118.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 118.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 118.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 117.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 117.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 117.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 116.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 116.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 116.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 116.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 115.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 115.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 115.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 114.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 114.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 114.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 114.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 113.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 113.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 113.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 113.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 112.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 112.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 112.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 112.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 112.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 111.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 111.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 111.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 111.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 110.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 110.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 110.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 110.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 110.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 110.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 109.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 109.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 109.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 109.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 109.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 108.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 108.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 108.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 108.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 107.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 107.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 107.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 107.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 106.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 106.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 106.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 106.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 106.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 106.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 105.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 105.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 105.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 105.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 105.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 105.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 104.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 104.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 104.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 103.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 103.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 103.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 103.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 103.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 103.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 103.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 103.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 102.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 102.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 102.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 102.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 102.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 102.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 101.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 101.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 101.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 100.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 100.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 100.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 100.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 100.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 99.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 99.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 99.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 99.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 99.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 98.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 98.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 98.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 98.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 98.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 98.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 97.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 97.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 97.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 97.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 97.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 96.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 96.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 96.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 96.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 96.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 96.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 95.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 95.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 95.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 94.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 94.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 94.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 94.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 94.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 94.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 93.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 93.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 93.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 93.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 93.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 93.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 93.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 93.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 93.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 93.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 92.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 92.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 92.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 92.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 92.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 91.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 91.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 91.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 91.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 90.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 90.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 90.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 89.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 89.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 89.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 89.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 89.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 88.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 88.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 87.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 87.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 87.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 87.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 86.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 86.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 85.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 85.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 85.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 84.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 84.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 83.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 83.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 83.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 83.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 82.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 82.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 82.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 81.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 81.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 80.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 78.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 76.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 75.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 73.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 71.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 71.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 71.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 70.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 68.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 65.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 65.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 62.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

178.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 178.2
FF:10164-103B2 76 years, female 178.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.2
Pig sample Sample description nTPM
Caudate
nTPM: 103.2
Samples: 4

Max nTPM: 116.4
Min nTPM: 87.3
Sample A Female 116.4
Sample B Female 100.0
Sample C Male 109.2
Sample D Male 87.3

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