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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:218.3 nTPM
FANTOM5:202.8 Scaled Tags Per Million
Pig:127.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044572Antibody HPA056798Antibody CAB016733Antibody CAB034368
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells MediumNot detectedMediumMedium









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 218.3
Samples: 246

Max nTPM: 707.7
Min nTPM: 2.3
Std nTPM: 140.9
Median nTPM: 206.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 707.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 676.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 657.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 646.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 626.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 611.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 517.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 510.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 490.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 475.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 474.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 470.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 454.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 449.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 443.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 442.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 438.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 436.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 433.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 433.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 428.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 422.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 421.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 420.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 417.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 399.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 395.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 385.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 384.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 384.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 378.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 377.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 377.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 376.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 373.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 369.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 365.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 361.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 357.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 353.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 346.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 346.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 344.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 344.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 339.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 336.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 335.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 333.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 333.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 333.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 323.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 321.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 320.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 319.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 314.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 313.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 309.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 308.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 307.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 306.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 303.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 303.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 302.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 302.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 299.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 297.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 297.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 292.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 292.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 290.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 290.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 289.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 283.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 282.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 282.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 280.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 279.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 275.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 271.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 271.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 270.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 270.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 270.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 268.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 268.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 267.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 265.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 264.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 264.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 263.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 258.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 249.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 248.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 246.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 245.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 244.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 243.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 243.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 241.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 239.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 239.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 238.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 237.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 237.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 236.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 231.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 226.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 226.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 226.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 225.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 221.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 221.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 220.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 220.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 219.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 219.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 218.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 218.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 214.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 213.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 211.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 210.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 207.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 206.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 200.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 199.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 198.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 197.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 196.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 192.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 191.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 191.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 179.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 179.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 178.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 173.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 172.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 170.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 169.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 168.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 168.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 167.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 167.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 164.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 162.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 161.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 159.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 159.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 156.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 156.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 155.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 154.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 151.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 151.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 150.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 150.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 144.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 143.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 143.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 143.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 138.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 138.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 138.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 137.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 135.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 134.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 132.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 132.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 132.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 131.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 130.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 130.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 129.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 128.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 119.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 118.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 116.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 112.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 112.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 111.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 111.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 110.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 109.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 108.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 108.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 101.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 100.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 100.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 100.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 100.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 94.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 93.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 93.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 93.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 91.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 90.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 89.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 88.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 85.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 80.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 80.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 77.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 77.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 77.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 74.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 73.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 73.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 70.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 66.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 66.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 64.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 62.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 62.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 61.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 53.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 50.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 47.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 45.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 44.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 43.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 41.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 36.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 36.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 34.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 34.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 30.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 28.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 28.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 26.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 25.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 22.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 19.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 15.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 15.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 14.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 12.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

202.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 202.8
FF:10164-103B2 76 years, female 202.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.4
Pig sample Sample description nTPM
Caudate
nTPM: 127.4
Samples: 4

Max nTPM: 154.1
Min nTPM: 91.0
Sample A Female 91.0
Sample B Female 125.2
Sample C Male 139.3
Sample D Male 154.1

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