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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:107.9 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:45.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB025310
Glial cells Low
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 107.9
Samples: 246

Max nTPM: 352.9
Min nTPM: 22.1
Std nTPM: 53.8
Median nTPM: 94.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 352.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 312.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 295.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 294.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 280.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 267.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 254.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 242.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 222.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 212.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 212.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 208.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 206.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 204.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 203.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 200.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 199.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 199.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 195.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 185.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 178.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 178.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 174.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 173.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 171.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 170.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 167.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 166.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 165.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 161.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 160.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 158.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 157.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 156.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 155.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 155.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 154.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 153.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 151.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 150.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 149.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 148.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 147.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 147.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 147.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 146.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 145.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 143.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 141.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 141.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 139.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 139.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 138.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 137.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 137.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 136.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 136.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 135.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 135.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 135.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 134.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 134.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 134.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 132.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 132.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 132.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 132.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 131.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 131.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 131.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 131.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 130.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 129.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 129.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 129.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 129.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 126.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 125.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 124.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 121.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 120.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 119.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 119.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 118.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 118.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 117.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 115.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 114.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 113.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 112.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 112.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 110.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 110.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 109.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 109.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 109.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 108.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 108.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 108.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 108.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 108.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 105.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 105.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 105.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 105.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 104.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 104.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 104.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 104.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 103.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 103.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 102.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 102.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 100.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 100.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 100.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 99.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 95.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 95.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 94.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 94.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 94.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 94.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 93.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 93.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 92.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 91.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 91.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 90.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 90.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 90.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 90.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 89.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 89.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 89.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 89.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 89.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 88.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 87.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 87.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 86.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 86.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 85.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 85.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 85.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 85.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 85.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 84.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 83.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 83.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 82.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 82.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 82.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 81.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 81.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 81.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 81.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 80.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 80.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 79.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 79.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 78.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 78.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 77.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 77.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 77.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 77.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 76.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 76.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 75.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 75.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 75.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 74.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 74.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 74.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 73.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 73.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 72.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 70.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 70.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 70.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 70.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 70.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 69.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 69.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 69.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 68.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 68.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 68.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 68.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 68.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 67.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 67.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 67.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 67.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 67.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 66.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 63.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 63.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 60.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 60.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 59.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 59.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 57.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 57.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 57.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 57.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 56.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 55.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 54.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 54.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 53.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 52.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 52.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 51.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 50.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 49.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 49.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 46.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 45.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 45.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 45.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 43.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 42.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 42.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 42.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 41.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 39.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 39.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 36.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 32.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 31.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 30.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 27.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 26.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 25.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 25.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 24.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 22.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.1
FF:10164-103B2 76 years, female 32.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.5
Pig sample Sample description nTPM
Caudate
nTPM: 45.5
Samples: 4

Max nTPM: 56.8
Min nTPM: 36.2
Sample A Female 36.2
Sample B Female 48.5
Sample C Male 56.8
Sample D Male 40.6

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