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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

133.172
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:46.9 nTPM
GTEx:33.9 nTPM
FANTOM5:143.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023252Antibody HPA023629Antibody HPA025963Antibody HPA031262Antibody CAB068208Antibody CAB068209Antibody CAB068210
Glial cells Not detectedNot detectedLowNot detectedMediumMediumMedium
Neuronal cells MediumMediumHighHighHighHighHigh














HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA023629
Hippocampal formation mean intensity 133.172
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 133.172
Molecular layer of the dentate gyrus 8.111
Granular dentate gyrus 8.782
CA1 - oriens layer 19.175
CA1 - pyramidal layer 34.569
CA1 - radiatum layer 15.620
CA2 - oriens layer 7.205
CA2 - pyramidal layer 8.651
CA2 - radiatum layer 15.569
CA3 - oriens layer 8.112
CA3 - pyramidal layer 22.941
CA3 - radiatum layer 16.557
Stratum lucidum 4.801
Lacunosum moleculare 6.197
Subiculum 49.167

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.9
Sample id Sample description nTPM
Hippocampus
nTPM: 46.9
1898 Male, age 80, left hemisphere 64.6
2621 Female, age 67, right hemisphere 61.2
1855 Male, age 76, left hemisphere 51.0
1911 Female, age 85, right hemisphere 43.1
2148 Female, age 91, left hemisphere 34.0
2529 Female, age 94, left hemisphere 27.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.9
Samples: 197

Max nTPM: 134.0
Min nTPM: 3.6
Std nTPM: 16.2
Median nTPM: 30.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 134.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 76.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 74.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 70.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 67.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 66.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 65.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 64.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 64.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 63.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 63.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 63.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 62.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 60.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 59.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 59.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 59.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 58.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 57.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 53.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 53.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 53.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 52.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 52.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 52.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 51.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 51.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 51.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 50.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 50.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 50.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 49.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 49.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 49.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 49.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 48.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 47.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 46.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 46.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 46.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 46.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 45.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 45.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 44.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 43.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 43.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 43.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 43.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 42.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 42.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 42.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 41.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 41.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 41.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 40.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 40.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 39.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 39.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 39.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 39.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 38.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 38.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 38.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 38.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 37.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 37.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 37.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 37.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 37.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 36.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 36.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 36.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 35.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 35.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 35.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 35.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 35.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 35.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 34.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 34.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 34.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 34.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 34.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 33.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 33.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 33.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 33.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 33.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 33.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 33.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 32.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 32.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 32.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 32.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 32.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 32.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 30.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 30.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 30.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 29.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 29.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 29.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 29.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 28.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 28.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 28.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 27.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 27.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 27.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 27.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 27.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 26.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 26.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 26.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 26.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 26.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 26.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 25.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 25.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 25.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 25.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 25.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 25.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 25.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 24.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 24.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 24.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 24.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 24.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 24.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 24.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 24.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 24.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 24.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 24.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 23.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 23.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 23.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 23.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 23.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 23.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 23.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 23.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 22.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 22.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 22.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 21.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 21.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 21.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 21.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 21.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 21.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 21.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 21.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 21.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 21.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 20.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 20.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 20.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 19.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 19.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 19.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 19.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 19.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 19.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 19.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 19.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 19.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 19.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 18.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 18.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 18.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 18.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 18.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 17.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 17.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 17.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 17.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 17.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 17.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 16.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 16.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 16.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 15.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 15.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 15.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 14.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 13.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 13.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 11.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 11.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 9.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 8.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 3.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 143.8
FF:10169-103B7 60 years, female 195.2
FF:10153-102I9 76 years, female 92.3

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