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SLC12A5
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  • SLC12A5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:137.3 nTPM
FANTOM5:252.9 Scaled Tags Per Million
Pig:90.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA072058
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 137.3
Samples: 246

Max nTPM: 268.3
Min nTPM: 17.4
Std nTPM: 55.4
Median nTPM: 139.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 268.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 259.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 257.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 257.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 254.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 245.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 239.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 231.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 231.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 228.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 226.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 225.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 222.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 221.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 221.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 221.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 219.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 217.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 215.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 214.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 213.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 209.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 209.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 209.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 206.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 205.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 203.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 202.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 201.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 200.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 199.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 196.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 194.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 194.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 194.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 193.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 192.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 192.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 191.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 191.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 188.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 187.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 186.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 185.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 185.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 184.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 184.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 183.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 182.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 182.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 182.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 182.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 181.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 181.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 180.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 180.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 180.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 179.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 179.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 179.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 179.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 178.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 177.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 176.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 176.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 175.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 174.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 173.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 173.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 173.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 172.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 172.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 172.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 171.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 171.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 171.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 170.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 170.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 169.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 169.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 169.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 168.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 168.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 168.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 167.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 167.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 166.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 166.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 165.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 163.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 163.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 161.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 160.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 159.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 159.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 158.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 158.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 157.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 157.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 156.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 156.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 154.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 153.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 151.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 151.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 150.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 150.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 150.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 150.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 150.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 149.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 148.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 147.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 147.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 147.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 146.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 146.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 145.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 143.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 141.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 140.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 140.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 139.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 138.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 138.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 137.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 137.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 136.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 135.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 135.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 135.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 135.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 134.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 133.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 133.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 133.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 133.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 133.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 132.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 131.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 131.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 130.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 129.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 129.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 129.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 129.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 128.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 127.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 127.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 127.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 126.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 123.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 123.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 122.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 122.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 120.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 119.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 117.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 117.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 117.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 116.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 115.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 115.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 114.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 113.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 111.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 108.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 107.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 103.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 103.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 103.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 103.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 103.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 103.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 102.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 100.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 98.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 96.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 94.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 91.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 89.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 89.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 89.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 87.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 87.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 86.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 84.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 82.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 82.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 80.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 79.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 78.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 77.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 76.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 75.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 75.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 74.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 74.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 74.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 72.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 71.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 69.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 69.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 67.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 66.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 66.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 65.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 65.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 63.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 62.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 60.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 57.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 57.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 57.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 57.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 56.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 53.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 52.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 51.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 50.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 50.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 47.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 44.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 42.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 41.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 41.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 39.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 35.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 29.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 29.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 25.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 23.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 22.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 17.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 252.9
FF:10164-103B2 76 years, female 252.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.7
Pig sample Sample description nTPM
Caudate
nTPM: 90.7
Samples: 4

Max nTPM: 109.5
Min nTPM: 68.4
Sample A Female 68.4
Sample B Female 92.7
Sample C Male 109.5
Sample D Male 92.1

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