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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:134.6 nTPM
FANTOM5:149.1 Scaled Tags Per Million
Pig:161.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA030131Antibody HPA030132Antibody HPA030133Antibody HPA030134
Glial cells Not detectedNot detectedNot detectedLow
Neuronal cells LowMediumLowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 134.6
Samples: 246

Max nTPM: 248.7
Min nTPM: 65.0
Std nTPM: 32.9
Median nTPM: 130.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 248.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 242.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 229.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 220.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 217.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 213.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 209.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 208.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 198.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 197.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 192.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 190.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 187.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 186.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 183.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 183.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 181.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 181.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 180.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 180.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 179.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 177.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 175.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 174.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 174.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 172.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 172.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 171.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 171.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 169.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 168.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 168.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 167.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 167.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 166.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 165.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 165.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 165.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 165.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 165.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 164.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 164.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 163.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 163.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 163.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 163.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 163.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 162.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 162.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 162.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 161.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 161.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 161.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 161.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 160.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 160.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 159.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 158.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 158.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 157.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 157.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 157.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 156.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 156.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 156.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 155.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 155.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 154.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 154.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 154.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 154.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 154.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 154.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 153.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 153.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 153.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 152.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 152.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 151.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 151.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 149.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 149.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 148.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 148.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 148.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 148.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 147.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 147.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 146.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 146.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 145.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 145.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 144.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 144.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 142.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 142.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 142.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 141.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 140.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 139.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 139.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 139.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 138.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 137.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 137.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 137.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 137.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 137.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 136.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 136.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 135.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 135.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 133.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 133.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 133.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 132.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 132.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 131.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 131.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 130.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 129.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 129.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 129.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 129.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 129.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 128.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 128.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 128.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 128.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 128.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 127.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 127.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 127.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 126.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 126.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 126.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 126.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 125.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 125.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 124.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 124.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 124.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 123.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 123.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 123.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 123.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 123.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 123.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 121.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 121.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 120.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 119.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 119.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 119.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 119.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 119.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 119.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 118.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 117.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 117.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 117.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 117.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 116.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 116.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 115.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 115.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 115.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 115.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 114.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 114.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 114.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 113.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 113.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 113.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 113.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 113.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 112.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 111.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 111.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 111.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 111.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 111.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 109.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 109.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 109.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 108.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 108.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 108.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 108.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 107.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 107.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 107.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 107.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 105.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 105.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 104.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 104.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 104.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 104.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 103.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 103.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 100.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 99.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 99.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 98.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 98.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 98.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 97.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 97.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 97.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 96.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 95.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 95.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 95.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 95.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 94.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 94.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 91.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 90.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 89.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 89.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 88.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 87.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 87.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 87.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 86.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 86.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 86.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 84.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 82.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 80.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 74.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 74.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 73.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 70.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 70.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 69.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 68.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 65.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 149.1
FF:10164-103B2 76 years, female 149.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.0
Pig sample Sample description nTPM
Caudate
nTPM: 161.0
Samples: 4

Max nTPM: 192.9
Min nTPM: 130.8
Sample A Female 130.8
Sample B Female 175.5
Sample C Male 192.9
Sample D Male 144.7

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