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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:51.8 nTPM
FANTOM5:121.6 Scaled Tags Per Million
Pig:22.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041315
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.8
Samples: 246

Max nTPM: 77.6
Min nTPM: 22.4
Std nTPM: 9.8
Median nTPM: 50.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 77.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 76.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 74.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 73.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 73.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 72.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 72.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 71.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 71.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 69.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 69.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 69.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 69.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 68.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 68.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 68.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 68.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 68.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 67.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 65.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 65.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 65.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 65.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 64.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 64.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 63.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 63.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 63.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 63.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 63.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 63.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 63.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 62.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 62.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 62.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 61.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 61.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 61.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 61.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 61.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 61.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 61.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 60.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 60.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 60.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 59.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 59.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 59.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 59.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 59.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 59.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 59.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 59.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 59.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 58.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 58.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 58.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 58.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 58.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 58.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 58.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 58.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 58.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 57.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 57.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 57.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 57.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 57.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 57.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 56.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 56.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 56.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 56.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 56.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 56.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 56.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 56.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 56.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 55.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 55.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 55.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 55.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 55.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 55.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 55.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 55.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 55.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 54.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 54.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 54.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 53.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 53.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 53.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 53.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 53.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 53.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 53.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 53.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 52.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 52.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 52.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 52.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 52.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 52.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 52.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 52.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 52.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 51.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 51.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 51.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 51.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 51.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 51.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 51.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 51.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 51.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 51.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 51.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 50.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 50.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 50.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 50.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 50.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 50.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 50.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 50.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 50.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 49.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 49.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 49.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 49.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 49.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 49.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 49.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 49.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 49.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 49.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 49.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 49.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 48.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 48.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 48.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 48.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 48.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 48.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 48.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 48.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 48.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 48.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 48.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 47.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 47.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 47.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 47.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 47.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 47.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 47.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 47.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 47.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 47.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 47.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 46.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 46.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 46.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 46.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 46.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 46.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 46.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 46.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 46.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 46.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 46.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 45.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 45.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 45.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 45.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 45.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 45.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 45.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 45.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 45.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 45.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 45.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 45.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 44.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 44.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 44.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 44.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 44.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 44.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 44.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 43.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 43.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 43.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 43.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 43.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 43.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 43.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 42.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 42.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 42.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 42.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 42.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 42.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 41.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 41.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 40.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 40.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 39.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 39.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 39.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 39.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 38.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 37.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 37.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 37.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 37.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 36.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 36.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 36.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 35.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 35.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 35.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 34.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 33.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 32.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 32.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 31.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 31.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 25.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 22.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

121.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 121.6
FF:10164-103B2 76 years, female 121.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.6
Pig sample Sample description nTPM
Caudate
nTPM: 22.6
Samples: 4

Max nTPM: 24.9
Min nTPM: 18.1
Sample A Female 23.7
Sample B Female 23.6
Sample C Male 24.9
Sample D Male 18.1

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