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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:125.4 nTPM
GTEx:100.9 nTPM
FANTOM5:250.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046149Antibody HPA050196Antibody CAB037225Antibody CAB037227
Glial cells Not detectedNot detectedNot detectedLow
Neuronal cells HighMediumMediumHigh









HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.4
Sample id Sample description nTPM
Hippocampus
nTPM: 125.4
1898 Male, age 80, left hemisphere 218.0
1855 Male, age 76, left hemisphere 149.6
2621 Female, age 67, right hemisphere 132.4
2148 Female, age 91, left hemisphere 115.2
1911 Female, age 85, right hemisphere 80.2
2529 Female, age 94, left hemisphere 57.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 100.9
Samples: 197

Max nTPM: 383.2
Min nTPM: 12.4
Std nTPM: 68.6
Median nTPM: 88.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 383.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 272.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 262.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 262.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 257.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 248.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 247.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 243.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 241.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 236.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 235.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 234.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 233.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 217.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 215.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 213.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 207.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 203.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 202.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 198.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 197.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 191.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 188.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 186.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 183.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 179.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 176.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 173.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 173.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 173.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 172.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 169.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 168.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 168.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 166.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 164.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 163.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 161.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 158.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 154.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 154.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 154.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 153.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 153.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 150.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 148.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 148.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 147.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 147.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 145.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 145.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 143.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 142.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 138.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 137.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 135.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 133.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 132.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 131.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 130.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 129.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 126.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 125.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 125.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 124.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 124.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 123.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 122.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 122.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 121.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 120.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 119.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 117.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 116.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 116.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 116.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 115.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 115.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 113.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 113.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 112.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 111.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 110.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 104.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 103.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 103.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 102.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 101.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 99.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 99.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 99.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 98.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 93.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 89.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 89.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 89.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 88.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 88.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 88.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 88.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 86.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 86.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 86.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 84.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 81.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 80.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 80.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 79.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 79.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 78.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 75.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 74.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 73.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 72.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 72.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 71.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 71.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 69.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 67.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 66.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 66.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 65.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 65.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 64.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 60.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 60.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 60.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 59.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 57.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 57.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 56.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 55.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 55.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 53.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 53.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 49.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 49.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 48.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 47.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 46.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 46.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 45.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 45.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 44.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 43.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 42.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 41.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 40.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 39.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 39.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 39.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 39.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 38.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 37.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 36.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 36.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 35.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 35.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 34.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 34.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 34.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 32.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 31.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 29.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 29.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 29.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 29.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 29.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 28.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 28.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 27.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 26.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 26.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 26.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 25.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 25.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 24.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 24.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 23.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 23.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 22.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 22.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 22.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 21.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 21.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 20.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 20.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 19.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 19.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 19.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 18.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 17.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 15.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 14.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 14.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 12.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 12.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

250.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 250.7
FF:10169-103B7 60 years, female 360.3
FF:10153-102I9 76 years, female 141.0

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