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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Medium
Synapses: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:123.1 nTPM
FANTOM5:515.9 Scaled Tags Per Million
Pig:184.6 nTPM

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA004802
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections Medium
Synapses Medium

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004802
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 123.1
Samples: 246

Max nTPM: 366.4
Min nTPM: 2.9
Std nTPM: 84.4
Median nTPM: 109.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 366.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 357.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 333.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 329.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 329.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 320.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 317.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 311.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 307.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 299.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 297.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 295.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 290.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 288.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 284.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 283.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 276.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 272.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 262.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 261.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 251.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 251.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 250.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 247.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 245.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 240.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 238.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 231.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 230.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 228.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 228.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 226.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 222.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 220.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 219.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 218.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 215.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 212.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 210.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 208.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 208.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 204.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 202.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 201.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 200.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 200.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 199.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 199.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 197.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 197.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 196.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 196.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 195.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 191.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 190.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 190.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 189.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 186.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 184.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 183.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 182.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 182.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 179.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 178.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 177.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 177.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 177.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 176.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 175.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 173.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 172.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 166.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 166.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 163.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 162.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 162.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 160.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 160.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 159.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 159.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 154.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 153.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 150.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 148.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 148.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 147.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 143.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 143.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 141.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 141.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 139.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 139.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 137.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 136.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 136.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 136.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 136.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 135.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 134.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 131.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 129.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 129.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 127.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 127.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 126.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 126.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 125.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 125.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 125.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 120.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 120.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 118.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 117.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 117.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 115.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 113.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 113.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 111.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 111.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 111.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 111.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 109.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 109.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 107.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 105.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 104.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 101.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 100.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 100.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 100.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 100.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 100.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 100.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 99.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 98.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 96.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 94.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 94.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 94.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 92.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 92.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 91.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 91.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 89.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 89.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 87.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 87.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 86.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 86.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 85.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 84.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 82.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 82.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 79.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 77.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 76.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 76.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 72.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 72.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 70.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 69.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 68.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 67.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 66.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 66.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 66.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 66.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 66.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 65.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 64.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 62.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 61.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 60.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 58.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 56.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 55.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 55.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 54.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 54.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 52.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 52.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 52.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 52.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 50.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 48.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 47.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 47.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 44.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 44.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 42.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 42.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 40.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 40.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 39.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 39.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 38.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 37.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 35.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 35.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 35.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 35.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 34.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 33.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 32.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 31.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 31.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 31.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 31.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 29.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 28.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 28.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 27.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 27.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 26.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 26.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 24.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 24.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 24.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 24.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 23.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 23.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 23.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 22.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 20.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 20.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 18.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 15.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 14.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 14.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 13.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 9.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 7.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

515.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 515.9
FF:10164-103B2 76 years, female 515.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.6
Pig sample Sample description nTPM
Caudate
nTPM: 184.6
Samples: 4

Max nTPM: 222.1
Min nTPM: 153.8
Sample A Female 153.8
Sample B Female 180.2
Sample C Male 222.1
Sample D Male 182.4

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