PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:56.4 nTPM
FANTOM5:36.8 Scaled Tags Per Million
Pig:73.4 nTPM
Mouse:3.4 nTPM
Allen mouse:4.0 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 56.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 43.5
1984 Male, age 76, both hemispheres 48.0
2090 Male, age 80, both hemispheres 42.9
2188 Female, age 91, both hemispheres 42.7
2301 Female, age 85, both hemispheres 40.3
Area postrema
nTPM: 41.7
2054 Male, age 76, both hemispheres 42.6
2306 Male, age 80, both hemispheres 41.4
2799 Male, age 61, both hemispheres 41.0
Dorsal cochlear nucleus
nTPM: 44.0
2058 Male, age 76, both hemispheres 45.8
2370 Male, age 61, both hemispheres 45.6
2802 Male, age 74, right hemisphere 44.5
2187 Female, age 91, both hemispheres 42.3
2378 Male, age 80, both hemispheres 42.0
Dorsal medullary reticular nucleus
nTPM: 46.2
2088 Male, age 76, both hemispheres 48.8
2040 Female, age 85, both hemispheres 48.5
2373 Male, age 61, both hemispheres 41.3
Dorsal motor vagal complex
nTPM: 45.9
2844 Male, age 55, unknown 53.6
2000 Male, age 74, unknown 50.5
2133 Female, age 91, both hemispheres 49.9
2797 Male, age 61, both hemispheres 48.2
2643 Male, age 74, both hemispheres 45.4
2813 Female, age 72, unknown 44.3
2185 Male, age 76, both hemispheres 40.9
2807 Female, age 85, both hemispheres 34.3
Dorsal tegmental nucleus
nTPM: 46.8
2083 Male, age 80, both hemispheres 54.8
1936 Male, age 76, left hemisphere 46.7
2326 Male, age 74, both hemispheres 42.9
2358 Male, age 61, both hemispheres 42.6
Dorsolateral tegmental area
nTPM: 44.8
2654 Male, age 80, both hemispheres 52.8
2141 Male, age 76, both hemispheres 48.8
2751 Female, age 85, both hemispheres 43.5
2360 Male, age 74, both hemispheres 40.8
2337 Male, age 61, both hemispheres 38.0
Gigantocellular reticular nuclei, medullary
nTPM: 44.8
2462 Male, age 74, both hemispheres 53.0
2314 Male, age 61, both hemispheres 47.4
1876 Female, age 85, both hemispheres 46.2
2310 Male, age 80, both hemispheres 43.6
2022 Male, age 76, right hemisphere 40.0
2387 Female, age 91, both hemispheres 38.8
Gigantocellular reticular nuclei, pars
nTPM: 46.1
2168 Male, age 76, both hemispheres 50.2
2084 Female, age 85, both hemispheres 49.1
2336 Male, age 61, both hemispheres 44.2
2330 Male, age 80, both hemispheres 43.5
2706 Male, age 80, both hemispheres 43.3
Inferior olive
nTPM: 46.2
2563 Male, age 74, both hemispheres 53.6
2628 Female, age 91, both hemispheres 48.6
2085 Female, age 85, both hemispheres 46.9
2178 Male, age 61, both hemispheres 43.4
2379 Male, age 80, both hemispheres 38.5
Kolliker-Fuse nucleus
nTPM: 49.4
2315 Male, age 76, right hemisphere 51.3
2163 Male, age 80, both hemispheres 50.9
2793 Female, age 91, left hemisphere 46.1
Lateral lemniscal nuclei
nTPM: 45.1
2169 Male, age 76, both hemispheres 52.2
2453 Male, age 74, right hemisphere 49.0
2746 Female, age 85, left hemisphere 48.7
2320 Female, age 91, left hemisphere 43.0
2036 Male, age 80, both hemispheres 32.8
Lateral medullary reticular nucleus
nTPM: 45.1
2044 Male, age 76, both hemispheres 48.9
2804 Female, age 91, both hemispheres 47.2
2374 Male, age 61, both hemispheres 45.1
2852 Male, age 80, both hemispheres 44.8
2305 Male, age 74, both hemispheres 43.2
2190 Female, age 85, both hemispheres 41.5
Lateral parabrachial nucleus
nTPM: 43.2
2139 Female, age 85, right hemisphere 52.2
2013 Male, age 80, both hemispheres 42.8
2792 Male, age 76, both hemispheres 39.1
2790 Male, age 61, both hemispheres 39.0
Lateral vestibular nucleus
nTPM: 50.1
2184 Male, age 76, both hemispheres 52.8
2311 Male, age 80, both hemispheres 47.4
Locus coeruleus
nTPM: 48.0
2123 Female, age 91, both hemispheres 56.2
1980 Male, age 76, both hemispheres 50.8
2014 Male, age 55, unknown 50.0
2317 Female, age 72, unknown 47.6
2720 Male, age 74, both hemispheres 47.6
2162 Male, age 80, both hemispheres 44.7
2788 Male, age 74, unknown 39.2
Medial olivary nucleus
nTPM: 40.0
2138 Female, age 91, both hemispheres 42.5
2851 Male, age 80, both hemispheres 41.9
1943 Male, age 61, both hemispheres 38.2
1962 Male, age 76, both hemispheres 37.2
Medial parabrachial nucleus
nTPM: 46.6
2170 Female, age 91, both hemispheres 49.8
2156 Male, age 61, both hemispheres 48.1
2463 Female, age 85, right hemisphere 46.2
2786 Male, age 76, both hemispheres 46.2
2854 Male, age 80, both hemispheres 42.9
Medial periolivary nuclei
nTPM: 47.6
2063 Male, age 76, both hemispheres 55.2
2171 Female, age 85, both hemispheres 53.6
2791 Male, age 74, right hemisphere 43.8
2458 Female, age 91, both hemispheres 43.0
2081 Male, age 80, both hemispheres 42.5
Medial vestibular nucleus
nTPM: 50.5
2624 Male, age 61, both hemispheres 52.8
2803 Female, age 91, both hemispheres 52.3
2134 Male, age 76, both hemispheres 51.4
2743 Female, age 85, both hemispheres 49.3
2801 Male, age 74, both hemispheres 48.5
2093 Male, age 80, both hemispheres 48.4
Motor facial nucleus
nTPM: 47.5
2062 Male, age 76, both hemispheres 56.9
2365 Male, age 74, right hemisphere 50.4
2327 Male, age 80, both hemispheres 45.8
2126 Male, age 61, both hemispheres 45.2
2795 Female, age 91, both hemispheres 43.6
2697 Female, age 85, both hemispheres 42.9
Motor hypoglossal nucleus
nTPM: 49.3
2277 Male, age 76, both hemispheres 53.4
2125 Female, age 91, both hemispheres 52.3
2182 Male, age 80, both hemispheres 50.4
2132 Female, age 85, both hemispheres 47.6
2461 Male, age 61, both hemispheres 42.5
Motor trigeminal nucleus
nTPM: 46.1
2560 Male, age 74, both hemispheres 47.7
2335 Male, age 61, both hemispheres 47.5
2079 Male, age 80, both hemispheres 47.0
2309 Male, age 76, both hemispheres 46.5
2321 Female, age 91, both hemispheres 41.9
Nuclei of the trapezoid body
nTPM: 52.1
1983 Male, age 76, both hemispheres 59.3
2159 Male, age 61, both hemispheres 56.3
2735 Female, age 85, both hemispheres 53.9
2166 Male, age 80, both hemispheres 49.0
2368 Female, age 91, both hemispheres 42.0
Nucleus ambiguus
nTPM: 56.4
2096 Female, age 85, both hemispheres 67.9
2071 Male, age 76, both hemispheres 44.8
Nucleus cuneatus
nTPM: 43.3
2131 Male, age 76, both hemispheres 53.0
2562 Male, age 61, both hemispheres 48.5
2100 Male, age 76, both hemispheres 47.3
2564 Male, age 74, both hemispheres 47.1
2805 Female, age 91, both hemispheres 43.6
2376 Male, age 61, both hemispheres 42.4
2381 Male, age 80, both hemispheres 38.5
2808 Female, age 85, both hemispheres 34.8
2380 Male, age 80, both hemispheres 34.3
Nucleus gracilis
nTPM: 40.5
2627 Male, age 74, both hemispheres 48.2
2382 Male, age 80, both hemispheres 37.5
2299 Female, age 85, both hemispheres 35.8
Nucleus raphe magnus
nTPM: 51.2
2172 Female, age 85, both hemispheres 57.4
2455 Male, age 74, both hemispheres 56.3
2160 Male, age 61, both hemispheres 56.1
2328 Male, age 80, both hemispheres 47.7
2051 Male, age 76, both hemispheres 47.4
2459 Female, age 91, both hemispheres 42.1
Nucleus raphe obscurus
nTPM: 40.4
2845 Female, age 85, midline 42.6
2142 Male, age 76, midline 40.4
2800 Male, age 61, midline 38.3
Nucleus raphe pallidus
nTPM: 42.2
2183 Male, age 80, midline 49.4
1924 Male, age 61, midline 42.6
2145 Male, age 76, midline 34.5
Nucleus tractus solitarii
nTPM: 42.3
2656 Male, age 76, both hemispheres 55.0
2307 Male, age 80, both hemispheres 42.1
2191 Female, age 85, both hemispheres 40.5
2144 Female, age 91, right hemisphere 31.6
Paramedian reticular nucleus
nTPM: 46.3
2050 Female, age 85, both hemispheres 50.8
2313 Male, age 61, both hemispheres 48.6
2057 Male, age 80, both hemispheres 47.4
2052 Male, age 76, both hemispheres 38.3
Parvicellular reticular nuclei
nTPM: 48.2
2558 Male, age 74, both hemispheres 50.7
2119 Male, age 80, both hemispheres 47.7
2095 Male, age 76, both hemispheres 46.1
Parvicellular reticular nuclei, medullary
nTPM: 48.2
2189 Female, age 91, both hemispheres 49.7
2181 Male, age 80, left hemisphere 48.2
2091 Female, age 85, both hemispheres 46.9
Pedunculopontine tegmental nucleus
nTPM: 44.4
1921 Female, age 85, both hemispheres 48.9
2334 Male, age 80, both hemispheres 48.9
2338 Male, age 61, both hemispheres 35.4
Peritrigeminal nucleus
nTPM: 47.7
2067 Female, age 85, both hemispheres 51.2
2136 Male, age 76, both hemispheres 47.1
2179 Male, age 61, both hemispheres 44.7
Pontine nuclei
nTPM: 53.2
2787 Female, age 85, both hemispheres 68.7
1863 Male, age 55, unknown 61.2
1968 Male, age 76, left hemisphere 57.2
2109 Female, age 72, unknown 54.2
2727 Male, age 61, right hemisphere 50.6
2454 Male, age 74, left hemisphere 48.5
2319 Female, age 91, both hemispheres 42.9
2115 Male, age 80, left hemisphere 42.6
Pontine raphe nucleus
nTPM: 52.2
2122 Female, age 85, midline 54.4
2853 Male, age 76, midline 50.1
Posteroventral cochlear nucleus
nTPM: 42.4
2070 Male, age 76, both hemispheres 48.5
2752 Female, age 85, both hemispheres 48.2
2371 Male, age 61, both hemispheres 42.5
2135 Female, age 91, both hemispheres 38.4
2341 Male, age 80, both hemispheres 34.2
Prepositus hypoglossal nucleus
nTPM: 46.0
2086 Male, age 80, both hemispheres 48.9
2855 Female, age 85, right hemisphere 43.1
Principal sensory trigeminal nucleus
nTPM: 47.9
2158 Male, age 61, both hemispheres 52.4
2324 Male, age 76, both hemispheres 50.4
2008 Male, age 80, left hemisphere 46.6
2367 Female, age 91, left hemisphere 42.0
Reticular pontine nucleus, caudal
nTPM: 48.7
2332 Male, age 80, right hemisphere 49.7
2457 Female, age 91, both hemispheres 49.7
2092 Male, age 76, both hemispheres 48.8
2559 Male, age 74, both hemispheres 46.7
Reticular pontine nucleus, oral
nTPM: 46.4
2012 Female, age 85, both hemispheres 50.7
1939 Male, age 80, both hemispheres 50.6
2167 Male, age 76, both hemispheres 48.8
2366 Female, age 91, both hemispheres 42.3
2361 Male, age 74, both hemispheres 39.8
Reticulotegmental nucleus
nTPM: 47.7
2325 Male, age 76, both hemispheres 49.0
2333 Male, age 80, both hemispheres 48.9
2322 Female, age 91, both hemispheres 47.8
2452 Male, age 74, both hemispheres 45.0
Spinal trigeminal nucleus, caudal
nTPM: 49.5
2447 Male, age 76, both hemispheres 56.9
2642 Male, age 74, both hemispheres 50.6
2390 Female, age 91, both hemispheres 49.6
2308 Male, age 80, both hemispheres 45.3
2312 Male, age 61, both hemispheres 45.2
Spinal trigeminal nucleus, interpolar
nTPM: 49.9
2625 Male, age 61, both hemispheres 57.7
2066 Male, age 76, right hemisphere 50.5
2033 Male, age 80, both hemispheres 49.8
2389 Female, age 91, both hemispheres 48.6
2386 Female, age 85, both hemispheres 43.1
Spinal trigeminal nucleus, oral
nTPM: 49.5
2164 Male, age 80, both hemispheres 49.9
1978 Male, age 76, both hemispheres 49.5
2737 Female, age 85, both hemispheres 48.9
Spinal vestibular nucleus
nTPM: 47.6
2780 Male, age 80, both hemispheres 53.6
2748 Male, age 76, both hemispheres 52.8
2186 Female, age 91, both hemispheres 49.3
2796 Male, age 61, both hemispheres 47.0
2806 Female, age 85, both hemispheres 43.5
2384 Male, age 74, both hemispheres 39.3
Subcoeruleus area
nTPM: 45.4
2323 Female, age 91, left hemisphere 49.7
1958 Male, age 80, both hemispheres 48.9
2089 Male, age 76, left hemisphere 45.3
2451 Male, age 74, both hemispheres 43.5
2369 Female, age 85, left hemisphere 39.7
Superior olive
nTPM: 45.9
1875 Female, age 85, both hemispheres 50.3
2364 Male, age 74, right hemisphere 48.6
2329 Male, age 80, right hemisphere 44.4
2561 Female, age 91, both hemispheres 43.3
2020 Male, age 76, both hemispheres 43.1
Superior vestibular nucleus
nTPM: 46.8
2061 Male, age 76, both hemispheres 50.9
2383 Male, age 74, both hemispheres 45.9
2015 Male, age 80, both hemispheres 43.8
Ventral medullary reticular nucleus
nTPM: 45.7
2060 Male, age 76, both hemispheres 51.8
2372 Male, age 61, both hemispheres 39.6
Ventral periolivary nuclei
nTPM: 45.1
2165 Male, age 80, both hemispheres 53.5
2130 Female, age 85, both hemispheres 50.6
2794 Female, age 91, left hemisphere 40.4
2023 Male, age 76, both hemispheres 36.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 48.2
2302 Female, age 91, both hemispheres 53.3
2741 Female, age 85, both hemispheres 50.8
1986 Male, age 76, both hemispheres 47.1
2180 Male, age 61, both hemispheres 45.1
2118 Male, age 80, both hemispheres 44.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 43.5
2449 Male, age 74, both hemispheres 50.6
2840 Female, age 85, both hemispheres 44.7
1959 Male, age 76, both hemispheres 44.3
2456 Female, age 91, both hemispheres 42.6
2161 Male, age 80, both hemispheres 41.6
2359 Male, age 61, both hemispheres 37.5

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 36.8
FF:10165-103B3 76 years, female 40.5
FF:10182-103D2 60 years, female 33.2
Medulla oblongata
Scaled Tags Per Million: 32.3
FF:10174-103C3 60 years, female 34.4
FF:10155-103A2 76 years, female 33.8
FF:10038-101F2 18-64 years, mixed 28.6
Pons
Scaled Tags Per Million: 35.8
FF:10033-101E6 18-54 years, mixed 35.8

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 73.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 68.5
Samples: 4

Max nTPM: 85.7
Min nTPM: 54.6
Sample A Female 54.6
Sample B Female 64.5
Sample C Male 85.7
Sample D Male 69.1
Pons
nTPM: 73.4
Samples: 4

Max nTPM: 90.1
Min nTPM: 63.7
Sample A Female 63.7
Sample B Female 67.7
Sample C Male 90.1
Sample D Male 71.9

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 3.4
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 3.4
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.1
Sample A Male 3.9
Sample B Male 3.1
Sample C Female 3.4
Sample D Female 3.3

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.0
69113841 Antisense, RP_050316_02_H06, Mouse strain C57BL/6J (56 days, male) 4.0
Pons
Expression energy: 3.2
69113841 Antisense, RP_050316_02_H06, Mouse strain C57BL/6J (56 days, male) 3.2

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