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CAPNS1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:283.9 nTPM
FANTOM5:156.0 Scaled Tags Per Million
Pig:221.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006872
Glial cells High
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 283.9
Samples: 246

Max nTPM: 473.3
Min nTPM: 161.6
Std nTPM: 56.6
Median nTPM: 276.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 473.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 471.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 444.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 443.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 431.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 429.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 429.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 425.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 422.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 421.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 402.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 399.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 394.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 384.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 383.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 383.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 375.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 373.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 370.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 369.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 369.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 366.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 366.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 362.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 361.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 360.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 360.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 353.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 353.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 348.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 346.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 344.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 342.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 340.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 339.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 339.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 338.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 336.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 335.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 334.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 331.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 330.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 330.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 328.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 328.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 328.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 326.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 325.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 325.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 323.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 322.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 320.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 320.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 318.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 317.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 317.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 317.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 316.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 315.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 315.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 314.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 314.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 312.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 312.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 311.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 310.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 309.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 308.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 308.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 308.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 307.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 307.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 307.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 307.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 306.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 305.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 305.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 304.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 303.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 303.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 302.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 301.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 300.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 299.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 298.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 298.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 298.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 297.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 297.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 295.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 294.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 294.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 294.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 293.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 291.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 290.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 289.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 289.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 285.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 285.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 284.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 284.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 284.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 284.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 284.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 284.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 283.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 282.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 282.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 282.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 281.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 281.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 280.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 279.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 279.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 278.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 278.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 278.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 278.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 277.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 277.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 277.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 276.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 276.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 276.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 275.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 275.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 273.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 273.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 273.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 272.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 271.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 271.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 271.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 270.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 270.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 269.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 269.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 268.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 268.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 267.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 265.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 265.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 264.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 264.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 264.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 264.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 264.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 263.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 263.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 262.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 262.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 262.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 261.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 261.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 260.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 260.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 259.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 259.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 259.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 258.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 258.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 257.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 257.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 256.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 256.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 255.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 252.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 252.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 252.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 252.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 251.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 250.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 250.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 247.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 247.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 247.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 247.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 246.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 246.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 246.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 245.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 245.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 244.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 244.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 243.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 243.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 243.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 243.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 242.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 242.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 241.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 241.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 240.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 240.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 239.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 238.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 237.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 236.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 235.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 235.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 234.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 234.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 233.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 233.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 233.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 232.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 231.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 231.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 230.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 230.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 229.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 227.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 226.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 226.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 226.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 225.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 225.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 224.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 224.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 223.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 221.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 220.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 220.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 218.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 218.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 217.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 216.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 215.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 215.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 214.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 212.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 206.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 205.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 204.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 204.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 196.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 194.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 194.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 193.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 191.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 185.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 179.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 168.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 165.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 161.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

156.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 156.0
FF:10164-103B2 76 years, female 156.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.4
Pig sample Sample description nTPM
Caudate
nTPM: 221.4
Samples: 4

Max nTPM: 284.5
Min nTPM: 185.2
Sample A Female 185.2
Sample B Female 225.4
Sample C Male 284.5
Sample D Male 190.6

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