We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SBDS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SBDS
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:111.0 nTPM
FANTOM5:183.3 Scaled Tags Per Million
Pig:69.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA028891
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.0
Samples: 246

Max nTPM: 180.5
Min nTPM: 67.0
Std nTPM: 19.3
Median nTPM: 108.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 180.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 174.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 174.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 173.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 165.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 163.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 163.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 161.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 161.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 157.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 151.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 151.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 150.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 147.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 145.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 144.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 144.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 144.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 143.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 142.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 142.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 141.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 140.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 136.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 136.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 135.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 133.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 133.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 133.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 132.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 131.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 131.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 131.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 131.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 128.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 128.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 128.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 127.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 126.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 125.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 125.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 125.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 124.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 124.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 124.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 124.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 123.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 123.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 123.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 123.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 122.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 121.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 121.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 121.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 121.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 121.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 121.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 121.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 121.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 119.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 119.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 119.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 119.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 119.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 119.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 118.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 118.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 117.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 117.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 117.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 116.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 116.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 116.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 115.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 115.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 114.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 114.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 114.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 114.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 114.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 114.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 114.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 113.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 113.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 113.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 113.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 113.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 113.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 113.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 113.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 113.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 113.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 112.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 112.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 112.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 112.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 112.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 111.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 111.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 111.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 111.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 111.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 110.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 110.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 110.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 110.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 110.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 110.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 110.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 109.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 109.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 109.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 108.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 108.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 108.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 108.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 108.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 108.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 108.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 108.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 108.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 108.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 108.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 107.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 107.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 106.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 105.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 105.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 105.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 104.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 104.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 104.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 104.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 104.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 104.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 104.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 104.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 103.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 103.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 103.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 103.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 103.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 103.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 102.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 102.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 102.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 102.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 102.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 101.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 101.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 101.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 101.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 100.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 100.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 100.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 100.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 100.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 100.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 100.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 100.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 99.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 99.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 99.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 99.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 99.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 99.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 98.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 98.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 98.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 98.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 98.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 98.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 98.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 98.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 98.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 98.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 98.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 98.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 97.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 97.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 97.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 96.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 96.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 96.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 96.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 96.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 95.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 95.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 94.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 94.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 94.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 94.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 94.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 94.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 94.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 93.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 93.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 93.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 93.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 93.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 92.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 92.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 92.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 92.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 92.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 91.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 91.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 91.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 91.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 91.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 91.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 90.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 90.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 90.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 90.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 90.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 89.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 88.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 88.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 88.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 88.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 87.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 86.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 83.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 83.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 83.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 81.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 79.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 79.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 79.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 77.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 76.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 67.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 183.3
FF:10164-103B2 76 years, female 183.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.9
Pig sample Sample description nTPM
Caudate
nTPM: 69.9
Samples: 4

Max nTPM: 73.0
Min nTPM: 67.5
Sample A Female 71.2
Sample B Female 67.5
Sample C Male 73.0
Sample D Male 67.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org