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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:136.5 nTPM
FANTOM5:65.5 Scaled Tags Per Million
Pig:17.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005543
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 136.5
Samples: 246

Max nTPM: 1165.3
Min nTPM: 35.4
Std nTPM: 116.2
Median nTPM: 110.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1165.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 901.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 760.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 728.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 447.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 398.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 372.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 371.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 331.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 302.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 289.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 273.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 269.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 249.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 246.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 239.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 234.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 232.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 228.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 221.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 219.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 217.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 210.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 207.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 205.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 205.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 205.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 203.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 200.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 199.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 198.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 197.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 189.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 188.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 186.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 185.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 182.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 179.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 176.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 173.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 173.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 168.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 167.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 166.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 161.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 159.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 157.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 157.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 157.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 156.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 156.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 155.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 154.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 154.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 152.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 151.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 150.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 148.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 147.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 146.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 146.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 145.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 141.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 140.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 140.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 140.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 140.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 139.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 137.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 137.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 135.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 134.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 133.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 133.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 132.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 132.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 132.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 131.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 131.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 130.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 130.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 130.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 129.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 129.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 128.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 128.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 128.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 127.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 127.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 126.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 126.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 124.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 124.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 123.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 121.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 121.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 121.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 119.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 118.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 116.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 116.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 116.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 116.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 115.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 114.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 114.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 114.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 114.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 114.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 114.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 113.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 113.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 113.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 112.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 111.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 111.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 110.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 110.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 110.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 110.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 110.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 109.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 109.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 109.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 108.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 108.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 108.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 107.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 107.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 107.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 105.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 105.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 105.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 105.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 105.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 103.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 103.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 102.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 102.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 101.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 100.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 100.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 100.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 100.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 99.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 99.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 99.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 97.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 96.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 95.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 95.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 94.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 94.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 94.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 93.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 93.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 93.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 93.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 93.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 92.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 92.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 92.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 91.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 91.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 91.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 89.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 89.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 89.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 89.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 88.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 87.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 87.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 86.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 86.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 86.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 85.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 85.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 84.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 84.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 83.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 83.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 83.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 82.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 82.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 81.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 81.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 81.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 81.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 81.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 81.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 80.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 80.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 80.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 79.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 79.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 79.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 78.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 78.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 77.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 77.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 77.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 76.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 76.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 75.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 75.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 73.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 73.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 72.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 72.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 72.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 72.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 70.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 69.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 68.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 67.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 66.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 65.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 65.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 65.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 64.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 64.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 64.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 61.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 60.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 59.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 59.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 59.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 58.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 58.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 51.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 50.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 49.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 47.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 46.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 44.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 35.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

65.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.5
FF:10164-103B2 76 years, female 65.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.2
Pig sample Sample description nTPM
Caudate
nTPM: 17.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 11.8
Sample A Female 28.2
Sample B Female 11.8
Sample C Male 13.9
Sample D Male 14.8

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