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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:124.5 nTPM
GTEx:160.3 nTPM
FANTOM5:141.4 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005543
Glial cells Low
Neuronal cells High


HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.5
Sample id Sample description nTPM
Hippocampus
nTPM: 124.5
2148 Female, age 91, left hemisphere 176.1
1898 Male, age 80, left hemisphere 154.6
2529 Female, age 94, left hemisphere 123.4
1855 Male, age 76, left hemisphere 123.2
2621 Female, age 67, right hemisphere 97.6
1911 Female, age 85, right hemisphere 72.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 160.3
Samples: 197

Max nTPM: 2224.5
Min nTPM: 38.0
Std nTPM: 199.2
Median nTPM: 123.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2224.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1571.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 806.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 566.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 563.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 431.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 360.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 327.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 310.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 303.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 276.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 268.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 261.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 258.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 250.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 240.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 230.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 229.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 224.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 224.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 221.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 220.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 219.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 217.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 208.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 207.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 207.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 205.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 201.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 197.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 195.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 189.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 189.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 188.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 185.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 184.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 183.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 182.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 182.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 179.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 178.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 177.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 177.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 175.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 175.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 175.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 172.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 171.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 170.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 170.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 169.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 167.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 166.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 165.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 165.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 162.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 161.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 160.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 160.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 157.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 154.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 154.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 151.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 151.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 149.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 148.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 143.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 143.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 143.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 143.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 142.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 141.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 140.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 140.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 139.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 137.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 137.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 136.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 134.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 134.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 133.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 133.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 132.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 131.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 131.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 130.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 130.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 129.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 129.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 129.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 128.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 128.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 128.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 126.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 125.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 125.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 125.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 124.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 123.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 123.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 122.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 120.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 120.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 119.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 118.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 118.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 117.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 116.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 115.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 114.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 113.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 112.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 112.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 112.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 111.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 111.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 110.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 110.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 110.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 110.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 109.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 109.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 109.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 108.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 107.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 106.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 106.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 105.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 105.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 105.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 104.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 104.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 103.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 102.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 102.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 101.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 101.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 100.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 97.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 96.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 96.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 96.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 95.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 95.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 94.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 94.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 94.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 93.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 92.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 92.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 91.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 91.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 91.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 90.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 89.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 89.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 88.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 88.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 87.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 86.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 86.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 85.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 85.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 85.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 84.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 83.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 82.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 79.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 79.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 79.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 78.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 77.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 77.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 77.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 76.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 76.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 75.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 75.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 72.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 71.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 71.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 70.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 70.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 69.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 69.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 69.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 67.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 66.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 65.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 64.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 62.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 60.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 58.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 48.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 45.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 39.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 38.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 141.4
FF:10169-103B7 60 years, female 228.4
FF:10153-102I9 76 years, female 54.3

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