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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:124.9 nTPM
FANTOM5:440.6 Scaled Tags Per Million
Pig:148.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009433Antibody HPA009696Antibody CAB004738
Glial cells HighMediumHigh
Neuronal cells HighMedium-






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 124.9
Samples: 246

Max nTPM: 212.3
Min nTPM: 83.4
Std nTPM: 22.2
Median nTPM: 122.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 212.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 195.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 194.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 192.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 188.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 187.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 182.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 174.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 171.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 171.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 168.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 168.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 166.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 162.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 162.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 160.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 157.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 156.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 156.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 155.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 154.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 154.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 154.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 153.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 152.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 152.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 151.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 151.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 150.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 149.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 148.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 147.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 147.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 147.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 146.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 145.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 145.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 145.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 145.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 144.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 144.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 143.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 143.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 143.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 142.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 142.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 142.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 141.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 141.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 141.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 140.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 140.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 139.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 139.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 139.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 138.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 138.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 138.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 138.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 138.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 138.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 137.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 137.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 137.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 137.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 136.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 136.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 136.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 136.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 135.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 135.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 134.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 134.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 134.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 134.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 133.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 133.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 133.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 132.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 132.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 132.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 132.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 131.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 131.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 131.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 131.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 130.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 130.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 130.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 130.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 130.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 130.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 129.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 129.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 128.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 128.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 128.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 128.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 127.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 127.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 127.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 127.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 126.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 126.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 126.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 126.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 126.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 125.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 125.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 125.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 125.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 124.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 124.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 124.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 123.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 123.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 123.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 123.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 123.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 122.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 122.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 122.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 122.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 121.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 121.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 121.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 121.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 120.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 120.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 120.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 120.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 119.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 119.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 119.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 119.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 119.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 119.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 119.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 119.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 118.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 118.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 117.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 117.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 117.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 116.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 116.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 116.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 115.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 115.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 115.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 115.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 115.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 115.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 114.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 114.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 114.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 114.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 114.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 114.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 113.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 113.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 113.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 113.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 112.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 112.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 112.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 112.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 112.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 111.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 111.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 110.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 110.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 110.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 110.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 110.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 109.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 108.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 108.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 108.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 107.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 107.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 106.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 106.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 105.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 105.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 105.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 105.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 105.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 105.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 105.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 104.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 104.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 104.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 104.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 104.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 104.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 104.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 104.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 103.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 103.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 103.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 103.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 103.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 103.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 103.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 102.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 102.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 102.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 101.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 101.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 101.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 100.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 100.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 100.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 100.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 99.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 99.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 99.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 99.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 98.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 98.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 98.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 97.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 97.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 96.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 95.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 93.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 92.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 92.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 92.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 91.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 91.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 90.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 90.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 87.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 86.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 85.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

440.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 440.6
FF:10164-103B2 76 years, female 440.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.4
Pig sample Sample description nTPM
Caudate
nTPM: 148.4
Samples: 4

Max nTPM: 158.7
Min nTPM: 140.3
Sample A Female 152.7
Sample B Female 140.3
Sample C Male 158.7
Sample D Male 142.0

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