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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:118.4 nTPM
FANTOM5:73.1 Scaled Tags Per Million
Pig:21.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010134Antibody HPA017068
Glial cells Not detectedLow
Neuronal cells LowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 118.4
Samples: 246

Max nTPM: 310.7
Min nTPM: 60.2
Std nTPM: 28.3
Median nTPM: 113.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 310.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 243.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 204.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 198.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 194.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 189.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 181.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 179.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 178.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 176.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 173.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 173.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 172.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 167.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 166.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 165.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 161.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 161.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 159.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 157.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 153.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 147.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 146.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 146.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 144.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 144.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 144.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 142.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 142.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 141.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 141.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 141.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 140.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 140.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 139.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 139.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 139.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 138.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 138.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 137.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 137.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 136.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 136.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 136.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 136.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 135.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 135.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 135.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 135.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 135.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 135.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 134.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 134.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 133.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 133.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 133.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 132.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 132.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 132.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 132.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 131.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 131.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 130.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 130.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 130.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 129.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 129.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 129.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 129.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 128.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 128.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 128.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 128.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 128.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 127.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 127.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 127.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 127.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 127.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 126.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 126.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 126.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 126.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 126.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 126.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 125.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 124.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 124.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 124.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 124.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 123.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 123.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 123.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 121.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 120.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 120.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 119.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 119.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 119.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 118.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 117.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 117.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 117.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 117.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 117.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 117.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 116.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 116.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 116.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 116.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 115.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 115.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 114.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 113.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 113.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 113.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 113.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 113.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 113.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 112.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 112.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 112.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 112.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 112.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 111.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 111.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 111.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 111.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 111.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 111.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 110.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 110.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 110.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 110.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 109.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 109.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 109.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 108.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 108.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 108.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 108.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 108.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 107.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 107.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 107.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 107.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 107.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 107.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 107.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 107.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 106.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 106.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 106.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 106.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 105.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 105.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 105.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 105.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 105.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 105.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 104.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 104.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 104.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 104.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 104.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 103.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 103.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 103.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 102.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 102.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 102.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 102.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 102.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 102.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 101.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 101.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 100.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 100.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 100.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 100.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 100.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 100.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 99.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 99.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 99.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 99.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 99.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 98.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 98.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 98.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 98.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 97.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 97.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 97.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 97.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 96.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 95.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 95.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 95.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 95.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 95.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 95.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 94.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 93.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 91.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 91.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 90.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 90.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 90.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 90.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 89.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 89.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 89.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 89.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 89.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 88.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 88.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 87.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 87.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 87.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 87.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 87.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 86.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 85.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 84.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 84.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 83.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 81.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 81.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 77.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 75.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 75.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 73.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 73.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 70.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 68.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 60.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.1
FF:10164-103B2 76 years, female 73.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.3
Pig sample Sample description nTPM
Caudate
nTPM: 21.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 15.3
Sample A Female 15.3
Sample B Female 22.2
Sample C Male 28.1
Sample D Male 19.8

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