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ATP6V1F
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  • ATP6V1F
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:236.5 nTPM
FANTOM5:188.6 Scaled Tags Per Million
Pig:115.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048700Antibody HPA062011Antibody CAB009529
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedMediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 236.5
Samples: 246

Max nTPM: 515.8
Min nTPM: 118.8
Std nTPM: 61.3
Median nTPM: 233.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 515.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 511.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 426.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 423.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 390.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 376.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 369.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 366.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 362.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 340.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 340.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 339.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 335.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 335.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 327.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 326.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 322.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 322.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 321.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 316.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 316.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 313.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 310.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 305.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 304.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 304.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 304.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 300.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 297.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 297.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 296.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 295.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 294.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 293.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 292.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 292.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 291.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 291.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 290.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 290.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 289.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 289.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 289.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 286.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 286.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 286.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 285.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 284.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 280.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 279.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 279.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 277.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 275.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 275.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 275.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 274.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 274.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 272.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 272.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 271.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 271.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 271.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 270.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 270.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 266.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 265.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 263.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 263.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 263.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 261.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 261.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 261.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 260.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 260.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 258.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 258.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 258.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 257.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 256.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 256.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 256.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 255.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 254.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 254.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 253.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 252.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 251.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 251.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 250.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 250.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 249.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 248.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 247.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 247.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 245.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 244.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 243.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 242.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 242.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 241.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 241.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 241.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 240.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 240.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 240.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 240.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 240.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 240.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 239.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 239.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 238.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 238.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 237.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 237.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 237.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 236.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 236.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 235.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 235.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 235.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 234.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 233.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 233.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 233.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 232.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 232.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 231.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 231.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 231.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 230.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 229.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 229.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 228.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 228.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 227.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 227.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 226.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 226.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 226.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 226.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 226.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 224.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 224.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 224.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 224.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 222.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 222.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 222.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 221.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 221.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 220.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 220.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 220.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 219.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 219.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 218.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 218.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 217.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 216.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 216.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 216.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 215.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 214.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 214.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 213.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 212.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 212.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 211.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 211.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 210.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 209.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 207.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 207.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 207.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 205.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 205.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 205.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 202.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 201.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 201.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 201.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 201.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 199.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 199.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 198.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 195.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 195.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 192.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 191.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 191.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 190.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 189.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 189.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 188.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 187.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 186.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 185.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 184.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 184.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 183.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 180.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 178.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 176.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 176.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 176.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 174.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 174.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 170.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 170.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 169.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 169.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 168.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 167.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 166.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 165.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 164.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 162.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 162.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 162.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 162.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 161.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 160.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 159.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 158.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 158.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 155.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 155.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 155.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 153.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 150.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 149.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 148.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 147.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 146.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 142.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 142.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 137.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 136.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 135.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 131.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 130.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 128.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 123.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 119.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 118.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

188.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 188.6
FF:10164-103B2 76 years, female 188.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.5
Pig sample Sample description nTPM
Caudate
nTPM: 115.5
Samples: 4

Max nTPM: 133.5
Min nTPM: 104.0
Sample A Female 107.1
Sample B Female 117.4
Sample C Male 133.5
Sample D Male 104.0

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