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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:433.8 nTPM
FANTOM5:698.9 Scaled Tags Per Million
Pig:327.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003482
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 433.8
Samples: 246

Max nTPM: 1122.2
Min nTPM: 211.9
Std nTPM: 128.0
Median nTPM: 424.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1122.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 788.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 775.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 772.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 766.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 724.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 705.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 701.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 701.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 691.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 671.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 670.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 660.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 658.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 651.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 645.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 645.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 642.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 628.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 625.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 624.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 623.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 623.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 610.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 607.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 601.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 591.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 591.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 579.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 577.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 576.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 576.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 569.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 569.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 569.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 566.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 566.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 559.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 559.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 550.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 536.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 533.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 529.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 527.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 526.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 526.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 524.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 522.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 520.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 519.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 515.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 513.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 513.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 511.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 510.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 509.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 509.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 508.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 507.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 504.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 503.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 502.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 501.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 500.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 498.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 498.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 493.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 489.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 488.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 485.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 483.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 482.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 481.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 480.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 480.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 479.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 477.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 477.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 477.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 476.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 474.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 473.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 472.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 471.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 470.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 469.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 466.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 466.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 465.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 464.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 463.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 462.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 461.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 460.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 460.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 457.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 457.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 456.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 456.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 456.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 453.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 452.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 452.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 448.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 447.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 447.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 445.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 443.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 441.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 441.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 439.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 436.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 436.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 435.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 433.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 432.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 432.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 429.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 429.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 428.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 426.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 425.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 424.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 424.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 422.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 421.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 419.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 418.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 417.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 416.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 415.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 413.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 409.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 408.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 407.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 405.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 404.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 403.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 397.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 397.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 396.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 396.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 394.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 394.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 394.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 392.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 392.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 392.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 392.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 390.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 390.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 388.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 388.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 387.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 387.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 386.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 382.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 377.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 376.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 372.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 369.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 369.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 367.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 367.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 365.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 363.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 361.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 359.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 358.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 357.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 353.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 351.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 350.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 350.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 348.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 348.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 347.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 347.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 345.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 344.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 344.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 343.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 342.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 340.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 340.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 338.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 338.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 336.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 336.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 334.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 333.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 333.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 333.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 330.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 329.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 328.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 326.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 326.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 323.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 322.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 322.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 315.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 314.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 313.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 313.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 312.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 311.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 305.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 304.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 301.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 301.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 300.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 297.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 297.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 296.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 296.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 293.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 293.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 291.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 287.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 286.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 284.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 282.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 277.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 277.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 276.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 274.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 274.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 271.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 271.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 268.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 266.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 264.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 261.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 256.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 251.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 244.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 244.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 236.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 230.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 224.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 224.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 221.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 220.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 213.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 211.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

698.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 698.9
FF:10164-103B2 76 years, female 698.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

327.3
Pig sample Sample description nTPM
Caudate
nTPM: 327.3
Samples: 4

Max nTPM: 389.4
Min nTPM: 290.4
Sample A Female 290.4
Sample B Female 325.7
Sample C Male 389.4
Sample D Male 303.5

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