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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:468.3 nTPM
FANTOM5:1149.6 Scaled Tags Per Million
Pig:441.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA056851
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

468.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 468.3
Samples: 246

Max nTPM: 1970.7
Min nTPM: 60.1
Std nTPM: 328.0
Median nTPM: 377.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1970.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1523.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1351.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1262.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1237.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1212.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1205.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1195.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1133.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1112.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1091.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1086.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1077.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1009.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 999.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 996.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 993.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 993.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 981.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 977.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 964.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 960.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 944.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 934.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 922.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 920.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 919.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 901.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 895.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 891.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 891.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 885.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 883.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 853.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 839.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 836.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 831.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 830.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 829.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 827.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 823.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 821.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 818.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 814.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 813.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 813.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 811.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 791.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 783.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 776.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 767.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 765.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 761.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 738.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 730.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 721.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 714.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 704.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 703.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 693.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 692.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 672.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 669.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 662.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 661.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 660.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 659.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 658.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 657.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 653.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 640.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 639.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 632.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 630.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 625.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 625.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 610.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 596.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 586.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 578.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 560.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 559.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 554.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 546.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 539.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 536.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 534.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 525.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 523.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 522.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 521.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 517.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 515.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 515.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 509.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 505.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 500.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 500.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 486.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 477.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 469.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 465.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 462.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 456.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 453.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 448.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 445.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 445.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 443.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 441.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 439.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 435.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 433.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 433.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 415.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 406.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 405.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 404.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 402.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 390.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 382.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 377.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 377.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 377.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 375.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 371.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 369.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 365.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 364.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 362.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 356.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 354.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 350.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 347.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 345.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 343.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 341.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 334.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 334.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 329.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 326.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 325.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 320.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 319.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 319.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 318.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 311.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 311.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 309.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 306.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 300.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 298.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 297.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 297.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 295.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 281.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 281.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 279.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 279.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 275.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 274.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 272.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 270.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 267.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 263.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 262.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 260.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 258.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 254.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 238.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 236.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 236.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 232.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 223.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 218.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 217.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 213.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 211.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 206.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 206.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 200.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 197.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 193.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 187.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 186.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 183.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 182.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 179.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 177.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 175.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 174.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 174.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 173.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 171.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 169.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 168.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 166.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 159.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 158.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 158.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 155.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 146.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 144.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 141.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 140.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 138.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 138.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 137.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 135.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 132.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 131.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 131.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 128.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 127.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 126.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 124.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 123.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 120.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 119.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 119.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 118.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 117.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 113.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 113.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 110.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 105.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 104.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 104.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 104.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 101.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 101.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 100.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 92.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 92.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 90.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 89.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 89.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 88.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 84.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 83.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 72.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 71.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 66.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 60.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1149.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1149.6
FF:10164-103B2 76 years, female 1149.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

441.3
Pig sample Sample description nTPM
Caudate
nTPM: 441.3
Samples: 4

Max nTPM: 562.7
Min nTPM: 314.0
Sample A Female 335.1
Sample B Female 314.0
Sample C Male 562.7
Sample D Male 553.2

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