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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:224.1 nTPM
FANTOM5:186.9 Scaled Tags Per Million
Pig:92.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB004082
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 224.1
Samples: 246

Max nTPM: 613.5
Min nTPM: 99.3
Std nTPM: 68.3
Median nTPM: 214.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 613.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 475.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 443.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 432.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 412.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 397.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 395.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 389.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 384.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 373.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 364.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 351.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 349.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 348.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 343.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 341.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 337.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 331.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 329.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 318.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 317.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 315.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 303.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 303.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 303.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 301.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 301.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 298.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 297.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 294.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 294.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 291.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 291.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 291.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 285.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 281.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 280.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 278.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 276.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 275.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 275.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 272.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 268.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 268.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 267.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 267.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 267.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 266.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 265.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 264.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 263.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 263.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 262.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 260.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 258.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 258.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 257.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 256.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 255.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 255.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 254.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 253.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 252.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 251.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 250.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 250.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 249.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 248.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 248.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 247.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 247.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 246.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 245.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 245.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 245.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 244.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 243.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 243.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 241.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 237.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 237.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 237.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 236.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 235.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 235.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 235.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 234.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 234.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 232.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 232.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 232.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 231.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 230.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 230.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 230.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 230.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 229.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 229.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 229.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 228.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 227.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 227.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 226.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 226.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 226.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 225.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 225.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 224.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 223.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 223.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 222.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 221.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 221.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 219.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 219.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 219.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 219.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 218.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 218.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 218.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 217.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 216.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 215.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 214.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 213.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 213.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 212.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 212.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 211.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 210.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 208.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 207.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 207.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 207.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 207.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 206.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 206.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 206.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 205.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 205.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 205.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 205.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 204.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 204.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 204.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 203.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 202.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 201.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 201.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 201.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 201.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 201.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 200.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 200.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 196.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 196.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 195.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 195.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 194.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 194.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 194.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 193.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 191.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 191.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 191.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 190.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 190.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 189.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 189.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 188.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 187.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 185.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 185.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 185.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 184.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 184.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 183.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 183.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 183.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 183.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 183.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 182.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 181.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 181.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 179.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 179.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 178.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 176.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 176.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 176.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 176.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 174.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 174.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 174.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 173.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 172.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 172.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 170.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 170.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 170.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 168.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 167.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 167.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 166.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 166.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 165.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 164.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 164.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 163.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 162.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 162.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 162.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 161.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 161.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 158.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 158.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 155.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 154.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 153.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 153.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 150.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 149.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 146.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 146.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 145.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 144.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 143.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 143.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 142.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 137.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 132.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 130.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 130.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 129.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 129.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 128.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 123.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 119.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 117.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 114.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 113.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 110.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 109.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 99.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

186.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 186.9
FF:10164-103B2 76 years, female 186.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.2
Pig sample Sample description nTPM
Caudate
nTPM: 92.2
Samples: 4

Max nTPM: 104.8
Min nTPM: 81.1
Sample A Female 86.9
Sample B Female 95.9
Sample C Male 104.8
Sample D Male 81.1

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