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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:48.3 nTPM
GTEx:30.5 nTPM
FANTOM5:37.0 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052293Antibody HPA057034
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.3
Sample id Sample description nTPM
Hippocampus
nTPM: 48.3
2621 Female, age 67, right hemisphere 62.1
2529 Female, age 94, left hemisphere 61.2
1911 Female, age 85, right hemisphere 52.8
2148 Female, age 91, left hemisphere 44.3
1898 Male, age 80, left hemisphere 38.9
1855 Male, age 76, left hemisphere 30.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.5
Samples: 197

Max nTPM: 101.1
Min nTPM: 0.5
Std nTPM: 22.4
Median nTPM: 26.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 101.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 99.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 99.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 98.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 93.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 83.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 82.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 81.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 78.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 75.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 75.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 73.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 70.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 68.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 68.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 67.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 67.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 67.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 64.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 62.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 61.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 61.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 60.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 59.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 58.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 58.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 55.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 55.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 54.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 53.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 53.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 52.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 51.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 51.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 50.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 50.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 49.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 48.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 48.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 46.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 45.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 45.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 44.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 44.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 44.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 44.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 44.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 43.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 43.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 42.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 41.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 41.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 40.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 40.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 39.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 39.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 39.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 39.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 38.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 38.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 37.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 36.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 36.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 36.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 35.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 35.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 34.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 33.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 33.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 33.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 33.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 33.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 33.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 32.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 32.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 32.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 32.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 31.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 31.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 31.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 30.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 30.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 30.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 30.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 29.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 29.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 29.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 29.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 28.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 28.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 28.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 27.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 27.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 27.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 27.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 26.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 26.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 26.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 26.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 26.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 25.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 25.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 24.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 24.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 24.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 24.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 23.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 23.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 23.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 23.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 22.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 22.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 22.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 22.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 21.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 20.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 20.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 19.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 19.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 19.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 19.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 18.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 17.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 17.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 17.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 17.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 17.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 17.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 17.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 17.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 16.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 16.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 16.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 16.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 16.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 16.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 16.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 16.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 16.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 16.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 16.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 15.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 15.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 15.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 14.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 14.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 14.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 13.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 13.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 13.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 13.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 12.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 12.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 11.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 11.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 11.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 11.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 10.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 10.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 10.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 10.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 9.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 9.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 9.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 9.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 8.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 8.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 7.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 7.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 7.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 7.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 7.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 7.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 7.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 7.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 7.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 6.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 5.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 5.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 5.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 5.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 4.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 4.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 4.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 4.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 4.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 3.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 3.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 3.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 2.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 2.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 2.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 2.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 0.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 0.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.0
FF:10153-102I9 76 years, female 39.8
FF:10169-103B7 60 years, female 34.2

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