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LSM4
HPA
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  • LSM4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:87.6 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:42.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040932
Glial cells Medium
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 87.6
Samples: 246

Max nTPM: 205.7
Min nTPM: 46.4
Std nTPM: 22.8
Median nTPM: 84.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 205.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 185.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 179.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 179.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 161.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 144.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 144.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 139.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 134.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 132.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 132.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 129.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 128.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 127.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 127.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 123.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 119.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 119.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 117.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 117.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 115.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 114.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 114.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 114.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 113.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 112.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 111.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 111.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 109.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 108.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 108.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 106.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 106.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 105.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 104.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 104.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 103.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 102.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 101.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 101.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 101.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 101.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 101.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 100.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 100.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 99.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 98.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 98.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 98.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 97.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 97.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 96.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 96.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 96.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 96.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 96.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 95.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 95.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 95.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 94.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 94.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 94.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 94.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 93.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 93.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 93.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 93.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 93.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 93.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 93.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 92.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 92.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 92.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 92.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 92.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 92.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 91.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 91.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 91.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 90.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 90.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 90.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 90.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 90.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 89.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 89.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 89.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 89.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 89.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 89.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 88.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 88.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 88.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 88.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 88.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 88.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 88.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 88.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 87.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 87.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 86.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 86.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 86.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 86.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 86.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 86.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 86.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 86.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 86.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 86.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 85.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 85.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 85.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 85.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 85.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 84.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 84.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 84.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 84.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 84.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 84.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 84.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 83.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 83.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 83.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 83.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 83.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 83.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 83.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 83.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 82.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 82.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 82.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 82.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 82.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 82.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 82.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 81.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 81.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 81.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 80.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 80.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 80.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 79.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 79.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 79.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 79.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 79.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 79.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 79.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 79.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 79.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 79.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 78.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 78.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 78.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 78.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 78.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 77.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 77.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 77.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 77.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 76.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 76.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 76.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 76.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 76.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 76.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 76.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 76.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 75.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 75.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 74.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 74.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 74.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 74.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 74.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 73.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 73.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 73.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 72.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 72.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 72.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 72.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 72.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 71.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 71.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 71.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 71.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 71.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 70.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 70.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 70.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 70.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 69.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 69.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 69.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 69.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 69.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 68.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 68.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 68.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 68.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 67.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 67.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 67.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 67.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 67.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 66.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 66.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 66.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 66.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 66.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 65.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 65.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 65.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 65.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 63.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 62.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 62.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 62.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 62.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 62.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 62.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 61.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 60.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 60.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 58.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 56.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 56.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 55.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 53.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 53.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 53.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 50.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 49.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 46.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.5
FF:10164-103B2 76 years, female 67.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.6
Pig sample Sample description nTPM
Caudate
nTPM: 42.6
Samples: 4

Max nTPM: 52.0
Min nTPM: 37.0
Sample A Female 38.1
Sample B Female 43.2
Sample C Male 52.0
Sample D Male 37.0

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