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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Neuronal projections: Low
Synapses: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:108.2 nTPM
FANTOM5:423.3 Scaled Tags Per Million
Pig:341.8 nTPM

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA042283
Glial cells Not detected
Neuronal cells Medium
Neuronal projections Medium
Synapses Not detected

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042283
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 108.2
Samples: 246

Max nTPM: 314.8
Min nTPM: 11.2
Std nTPM: 56.1
Median nTPM: 109.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 314.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 282.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 239.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 230.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 225.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 216.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 213.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 209.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 208.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 207.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 203.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 201.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 197.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 194.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 192.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 187.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 186.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 186.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 185.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 184.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 182.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 181.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 180.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 180.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 178.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 178.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 178.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 177.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 177.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 174.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 174.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 172.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 172.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 172.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 172.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 169.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 169.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 165.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 165.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 164.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 163.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 163.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 161.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 161.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 161.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 160.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 159.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 157.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 156.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 155.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 154.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 152.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 152.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 151.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 151.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 149.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 149.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 149.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 148.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 148.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 146.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 143.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 142.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 141.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 141.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 139.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 138.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 137.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 137.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 136.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 135.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 134.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 133.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 133.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 133.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 133.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 132.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 132.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 132.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 132.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 132.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 131.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 130.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 130.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 128.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 128.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 128.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 128.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 126.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 125.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 125.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 125.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 124.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 124.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 123.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 122.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 122.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 120.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 120.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 117.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 117.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 117.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 116.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 116.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 114.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 114.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 114.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 114.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 113.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 112.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 112.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 112.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 112.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 112.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 111.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 111.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 110.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 110.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 109.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 109.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 109.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 108.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 108.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 108.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 107.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 107.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 107.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 106.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 106.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 106.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 105.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 104.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 103.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 103.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 100.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 98.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 96.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 95.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 95.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 95.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 93.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 91.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 90.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 89.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 89.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 89.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 87.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 86.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 86.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 86.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 84.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 84.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 84.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 84.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 83.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 83.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 82.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 82.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 82.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 80.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 80.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 79.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 79.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 79.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 76.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 76.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 76.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 74.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 74.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 73.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 72.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 72.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 71.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 70.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 70.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 68.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 66.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 66.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 63.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 63.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 61.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 61.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 60.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 60.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 59.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 59.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 58.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 58.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 55.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 51.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 51.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 50.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 50.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 50.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 49.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 49.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 48.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 48.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 47.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 44.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 42.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 40.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 39.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 39.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 38.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 37.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 35.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 35.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 35.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 34.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 34.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 34.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 32.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 32.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 29.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 29.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 29.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 27.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 25.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 24.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 23.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 22.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 22.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 21.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 21.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 21.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 20.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 19.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 19.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 17.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 17.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 16.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 16.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 14.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 14.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 14.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 11.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

423.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 423.3
FF:10164-103B2 76 years, female 423.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.8
Pig sample Sample description nTPM
Caudate
nTPM: 341.8
Samples: 4

Max nTPM: 416.0
Min nTPM: 275.9
Sample A Female 328.6
Sample B Female 416.0
Sample C Male 346.7
Sample D Male 275.9

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