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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:71.2 nTPM
FANTOM5:31.6 Scaled Tags Per Million
Pig:24.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049317
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 71.2
Samples: 246

Max nTPM: 148.1
Min nTPM: 19.9
Std nTPM: 22.5
Median nTPM: 70.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 148.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 140.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 139.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 128.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 120.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 112.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 112.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 111.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 111.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 110.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 106.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 106.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 105.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 105.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 102.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 102.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 101.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 101.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 101.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 100.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 100.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 100.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 99.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 99.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 99.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 98.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 98.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 97.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 96.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 95.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 94.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 94.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 94.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 94.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 94.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 93.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 93.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 93.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 92.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 92.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 91.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 91.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 91.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 91.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 91.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 90.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 90.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 89.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 88.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 88.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 88.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 87.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 87.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 87.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 87.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 86.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 86.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 86.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 86.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 86.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 86.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 86.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 86.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 85.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 85.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 85.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 85.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 85.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 85.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 84.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 83.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 83.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 83.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 83.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 82.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 82.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 82.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 82.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 81.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 81.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 81.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 80.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 80.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 80.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 79.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 79.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 79.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 79.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 79.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 78.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 78.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 78.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 78.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 78.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 77.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 77.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 77.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 76.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 76.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 75.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 75.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 74.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 74.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 74.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 74.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 73.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 73.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 73.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 73.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 72.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 72.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 72.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 72.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 72.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 72.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 71.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 70.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 70.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 70.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 70.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 70.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 70.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 70.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 69.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 69.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 69.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 69.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 69.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 69.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 68.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 68.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 68.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 68.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 67.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 67.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 67.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 67.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 67.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 66.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 66.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 66.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 65.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 65.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 65.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 65.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 64.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 64.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 64.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 64.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 64.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 63.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 63.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 63.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 63.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 62.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 62.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 62.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 61.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 61.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 61.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 61.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 60.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 60.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 60.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 59.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 59.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 59.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 59.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 58.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 58.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 58.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 57.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 57.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 57.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 56.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 56.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 56.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 56.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 55.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 55.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 54.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 54.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 54.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 53.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 53.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 53.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 52.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 52.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 52.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 51.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 50.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 50.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 50.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 49.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 49.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 48.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 46.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 45.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 45.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 45.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 44.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 43.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 43.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 43.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 43.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 42.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 42.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 41.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 41.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 41.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 40.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 39.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 39.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 39.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 38.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 38.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 38.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 38.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 37.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 36.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 35.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 35.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 34.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 34.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 34.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 34.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 32.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 31.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 31.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 30.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 30.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 29.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 28.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 26.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 19.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.6
FF:10164-103B2 76 years, female 31.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.9
Pig sample Sample description nTPM
Caudate
nTPM: 25.0
Samples: 4

Max nTPM: 28.7
Min nTPM: 20.5
Sample A Female 20.5
Sample B Female 27.9
Sample C Male 28.7
Sample D Male 22.7

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