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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:60.5 nTPM
FANTOM5:94.3 Scaled Tags Per Million
Pig:97.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031813Antibody HPA076571
Glial cells Not detectedNot detected
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.5
Samples: 246

Max nTPM: 129.8
Min nTPM: 19.7
Std nTPM: 21.2
Median nTPM: 57.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 129.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 121.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 114.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 113.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 112.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 108.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 107.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 107.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 99.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 99.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 98.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 98.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 98.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 98.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 93.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 92.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 92.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 92.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 91.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 90.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 90.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 89.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 88.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 88.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 88.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 88.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 87.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 87.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 86.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 86.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 85.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 85.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 85.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 85.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 85.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 84.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 84.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 84.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 84.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 83.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 83.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 82.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 82.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 82.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 82.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 82.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 82.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 81.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 81.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 80.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 80.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 79.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 79.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 79.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 78.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 78.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 76.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 75.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 75.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 75.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 75.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 74.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 74.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 73.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 73.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 73.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 73.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 72.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 71.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 71.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 71.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 71.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 70.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 70.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 70.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 70.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 69.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 69.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 69.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 68.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 68.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 68.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 68.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 68.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 67.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 67.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 67.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 67.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 66.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 66.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 66.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 65.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 65.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 64.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 63.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 63.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 62.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 62.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 62.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 62.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 62.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 61.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 60.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 60.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 60.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 60.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 60.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 60.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 60.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 60.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 59.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 58.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 58.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 58.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 58.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 58.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 58.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 58.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 57.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 57.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 57.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 57.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 57.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 57.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 56.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 56.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 56.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 56.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 55.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 55.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 55.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 55.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 55.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 55.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 54.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 54.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 54.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 54.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 54.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 53.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 53.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 53.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 53.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 53.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 52.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 52.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 52.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 52.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 51.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 51.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 51.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 50.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 50.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 50.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 49.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 49.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 49.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 48.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 48.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 48.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 48.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 48.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 47.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 47.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 47.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 47.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 47.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 47.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 47.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 47.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 47.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 47.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 45.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 45.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 45.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 45.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 45.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 44.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 44.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 43.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 43.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 43.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 42.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 42.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 42.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 42.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 42.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 41.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 41.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 41.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 41.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 41.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 41.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 40.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 40.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 40.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 39.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 39.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 39.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 39.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 38.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 38.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 37.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 37.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 36.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 36.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 36.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 36.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 35.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 35.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 35.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 34.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 34.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 34.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 34.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 33.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 32.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 32.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 32.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 31.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 31.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 31.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 30.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 30.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 29.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 29.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 29.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 29.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 28.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 24.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 24.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 23.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 22.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 19.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

94.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 94.3
FF:10164-103B2 76 years, female 94.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.9
Pig sample Sample description nTPM
Caudate
nTPM: 97.9
Samples: 4

Max nTPM: 115.6
Min nTPM: 79.2
Sample A Female 79.2
Sample B Female 104.8
Sample C Male 115.6
Sample D Male 92.1

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