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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

92.657
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:216.2 nTPM
GTEx:134.3 nTPM
FANTOM5:268.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007865Antibody CAB025862
Glial cells Not detectedMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA007865
Hippocampal formation mean intensity 92.657
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 58.691
Molecular layer of the dentate gyrus 56.782
Granular dentate gyrus 63.214
CA1 - oriens layer 48.996
CA1 - pyramidal layer 73.929
CA1 - radiatum layer 60.776
CA2 - oriens layer 44.991
CA2 - pyramidal layer 83.650
CA2 - radiatum layer 58.226
CA3 - oriens layer 37.755
CA3 - pyramidal layer 56.905
CA3 - radiatum layer 48.289
Stratum lucidum 47.088
Lacunosum moleculare 51.152
Subiculum 45.748

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.2
Sample id Sample description nTPM
Hippocampus
nTPM: 216.2
2529 Female, age 94, left hemisphere 303.7
2148 Female, age 91, left hemisphere 229.5
1911 Female, age 85, right hemisphere 211.4
2621 Female, age 67, right hemisphere 205.7
1898 Male, age 80, left hemisphere 182.7
1855 Male, age 76, left hemisphere 164.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 134.3
Samples: 197

Max nTPM: 371.3
Min nTPM: 9.0
Std nTPM: 56.2
Median nTPM: 126.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 371.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 319.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 295.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 295.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 267.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 255.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 255.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 253.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 245.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 245.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 240.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 235.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 226.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 225.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 223.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 222.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 217.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 216.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 213.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 206.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 205.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 203.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 202.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 200.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 196.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 194.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 191.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 188.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 187.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 186.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 183.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 181.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 179.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 179.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 178.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 176.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 175.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 175.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 174.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 174.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 173.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 170.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 169.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 168.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 168.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 167.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 167.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 166.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 163.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 162.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 160.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 159.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 159.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 158.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 157.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 156.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 156.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 156.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 156.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 155.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 155.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 154.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 152.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 151.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 151.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 150.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 150.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 149.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 148.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 146.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 144.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 143.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 143.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 142.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 142.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 141.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 139.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 139.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 139.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 138.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 137.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 137.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 134.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 133.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 133.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 133.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 132.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 131.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 131.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 130.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 130.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 130.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 129.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 129.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 128.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 128.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 128.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 127.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 126.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 126.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 126.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 126.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 126.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 125.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 125.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 125.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 124.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 123.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 120.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 120.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 120.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 119.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 119.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 118.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 118.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 118.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 118.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 118.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 118.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 117.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 116.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 115.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 115.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 115.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 114.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 113.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 112.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 112.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 112.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 107.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 107.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 105.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 105.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 105.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 105.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 102.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 102.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 101.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 101.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 101.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 99.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 98.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 98.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 97.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 96.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 95.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 95.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 95.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 94.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 93.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 92.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 92.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 90.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 89.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 88.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 88.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 88.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 87.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 87.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 86.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 85.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 85.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 84.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 84.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 82.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 82.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 82.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 81.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 78.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 77.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 77.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 77.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 74.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 74.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 72.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 72.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 70.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 69.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 65.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 63.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 63.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 62.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 62.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 62.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 62.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 61.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 59.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 59.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 58.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 58.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 58.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 57.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 38.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 36.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 36.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 29.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 9.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

268.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 268.7
FF:10153-102I9 76 years, female 380.6
FF:10169-103B7 60 years, female 156.8

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