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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:293.0 nTPM
FANTOM5:429.6 Scaled Tags Per Million
Pig:423.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015649Antibody HPA015650
Glial cells Not detectedMedium
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 293.0
Samples: 246

Max nTPM: 828.9
Min nTPM: 129.8
Std nTPM: 92.0
Median nTPM: 288.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 828.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 608.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 539.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 525.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 502.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 482.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 463.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 456.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 448.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 447.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 440.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 435.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 424.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 424.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 422.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 421.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 417.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 413.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 413.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 408.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 404.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 402.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 400.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 396.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 395.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 393.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 392.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 390.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 389.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 389.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 388.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 387.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 387.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 386.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 384.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 384.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 384.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 383.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 382.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 381.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 379.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 375.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 374.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 374.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 370.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 369.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 368.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 366.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 363.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 363.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 362.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 362.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 360.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 360.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 360.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 357.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 357.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 356.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 355.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 355.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 354.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 354.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 354.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 353.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 352.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 352.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 351.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 350.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 344.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 344.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 343.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 343.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 340.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 339.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 338.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 338.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 337.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 337.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 336.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 336.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 335.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 335.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 332.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 330.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 328.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 327.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 327.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 327.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 326.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 325.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 324.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 322.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 318.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 317.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 316.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 315.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 313.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 312.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 312.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 312.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 311.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 311.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 311.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 306.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 306.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 305.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 304.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 303.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 303.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 302.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 301.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 300.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 300.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 299.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 298.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 297.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 297.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 296.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 293.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 293.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 290.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 290.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 289.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 287.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 287.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 287.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 286.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 286.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 285.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 284.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 283.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 283.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 280.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 280.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 279.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 278.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 278.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 277.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 274.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 274.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 271.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 271.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 270.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 268.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 268.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 267.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 266.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 264.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 263.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 262.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 261.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 260.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 259.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 257.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 257.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 256.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 252.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 251.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 251.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 250.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 250.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 249.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 246.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 245.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 244.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 244.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 244.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 242.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 242.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 239.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 238.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 238.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 235.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 235.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 234.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 233.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 230.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 227.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 225.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 224.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 223.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 223.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 222.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 221.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 221.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 221.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 219.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 218.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 217.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 215.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 213.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 212.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 211.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 210.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 209.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 208.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 207.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 206.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 203.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 202.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 201.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 199.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 196.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 196.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 196.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 192.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 190.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 189.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 189.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 189.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 189.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 188.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 188.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 186.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 185.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 184.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 183.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 183.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 182.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 181.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 181.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 181.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 181.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 180.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 180.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 176.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 176.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 173.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 170.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 166.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 164.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 163.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 161.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 161.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 161.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 161.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 157.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 151.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 148.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 147.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 145.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 141.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 140.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 129.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

429.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 429.6
FF:10164-103B2 76 years, female 429.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.0
Pig sample Sample description nTPM
Caudate
nTPM: 423.0
Samples: 4

Max nTPM: 487.8
Min nTPM: 382.5
Sample A Female 398.6
Sample B Female 423.1
Sample C Male 487.8
Sample D Male 382.5

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