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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:67.5 nTPM
FANTOM5:70.5 Scaled Tags Per Million
Pig:23.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051409Antibody CAB031904
Glial cells Not detectedLow
Neuronal cells MediumLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.5
Samples: 246

Max nTPM: 134.5
Min nTPM: 17.6
Std nTPM: 18.4
Median nTPM: 66.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 134.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 122.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 111.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 109.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 108.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 106.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 103.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 101.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 99.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 98.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 98.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 97.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 96.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 95.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 95.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 93.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 93.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 93.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 92.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 92.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 91.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 91.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 89.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 88.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 88.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 87.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 87.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 87.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 86.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 86.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 86.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 85.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 85.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 85.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 84.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 84.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 84.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 84.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 84.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 84.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 84.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 83.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 83.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 83.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 83.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 83.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 83.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 82.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 82.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 82.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 82.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 82.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 81.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 81.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 81.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 80.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 80.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 80.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 80.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 79.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 79.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 79.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 79.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 78.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 78.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 78.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 78.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 78.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 78.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 77.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 77.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 76.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 76.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 76.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 76.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 76.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 76.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 75.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 75.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 75.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 74.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 74.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 74.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 73.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 73.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 73.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 73.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 73.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 73.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 73.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 73.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 72.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 72.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 72.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 71.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 71.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 70.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 70.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 70.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 70.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 70.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 70.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 69.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 69.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 69.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 69.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 69.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 68.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 68.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 68.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 68.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 68.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 68.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 68.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 67.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 67.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 66.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 66.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 66.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 66.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 66.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 66.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 66.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 65.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 65.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 65.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 65.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 65.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 65.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 64.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 64.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 64.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 64.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 64.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 64.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 64.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 64.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 64.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 64.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 63.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 63.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 63.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 63.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 63.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 63.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 62.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 62.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 62.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 62.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 61.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 61.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 61.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 61.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 61.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 61.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 60.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 60.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 60.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 60.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 59.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 59.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 58.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 58.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 58.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 58.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 57.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 57.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 57.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 56.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 55.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 55.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 55.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 55.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 55.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 55.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 54.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 54.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 54.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 53.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 52.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 52.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 52.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 52.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 52.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 52.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 52.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 51.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 51.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 51.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 51.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 51.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 50.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 50.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 50.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 49.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 49.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 49.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 49.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 49.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 48.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 48.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 48.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 48.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 48.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 47.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 47.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 46.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 46.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 46.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 45.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 45.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 45.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 44.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 44.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 44.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 43.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 43.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 42.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 41.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 39.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 39.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 38.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 38.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 37.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 36.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 34.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 34.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 34.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 32.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 30.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 27.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 26.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 25.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 17.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.5
FF:10164-103B2 76 years, female 70.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.8
Pig sample Sample description nTPM
Caudate
nTPM: 23.8
Samples: 4

Max nTPM: 27.5
Min nTPM: 19.2
Sample A Female 23.6
Sample B Female 27.5
Sample C Male 24.8
Sample D Male 19.2

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