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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:134.2 nTPM
FANTOM5:83.7 Scaled Tags Per Million
Pig:40.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006812
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 134.2
Samples: 246

Max nTPM: 309.0
Min nTPM: 87.4
Std nTPM: 31.8
Median nTPM: 126.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 309.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 296.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 269.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 256.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 251.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 215.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 210.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 204.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 198.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 198.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 194.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 179.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 179.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 178.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 178.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 178.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 177.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 177.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 176.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 176.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 176.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 175.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 173.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 172.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 172.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 170.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 169.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 168.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 168.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 168.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 167.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 167.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 167.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 167.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 165.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 164.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 163.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 162.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 161.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 161.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 161.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 159.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 158.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 157.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 156.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 155.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 155.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 154.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 153.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 153.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 153.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 153.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 152.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 150.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 149.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 149.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 149.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 148.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 147.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 146.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 146.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 145.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 145.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 144.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 143.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 142.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 142.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 142.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 142.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 141.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 141.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 141.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 140.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 140.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 139.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 139.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 137.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 137.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 136.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 136.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 135.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 135.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 135.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 134.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 134.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 134.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 132.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 132.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 132.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 132.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 132.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 131.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 131.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 130.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 130.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 130.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 130.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 130.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 129.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 129.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 129.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 129.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 129.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 129.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 129.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 128.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 128.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 128.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 128.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 128.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 128.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 128.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 127.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 127.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 127.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 127.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 126.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 126.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 126.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 126.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 126.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 126.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 125.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 125.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 125.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 125.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 124.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 124.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 124.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 124.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 124.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 123.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 123.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 123.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 123.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 122.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 122.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 122.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 122.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 121.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 121.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 121.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 121.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 121.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 121.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 121.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 121.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 121.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 121.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 120.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 120.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 120.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 119.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 118.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 118.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 118.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 118.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 118.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 118.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 117.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 117.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 117.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 117.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 116.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 116.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 116.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 116.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 116.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 115.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 115.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 115.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 114.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 114.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 114.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 114.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 114.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 114.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 113.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 113.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 113.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 113.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 113.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 113.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 113.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 113.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 113.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 113.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 112.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 112.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 112.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 112.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 112.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 111.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 111.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 111.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 111.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 111.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 111.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 110.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 110.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 110.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 110.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 110.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 109.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 109.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 108.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 108.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 108.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 107.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 106.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 106.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 106.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 106.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 105.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 105.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 104.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 104.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 104.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 103.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 103.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 103.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 102.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 100.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 100.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 98.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 98.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 97.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 97.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 96.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 95.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 95.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 94.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 93.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 91.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 87.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 87.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

83.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.7
FF:10164-103B2 76 years, female 83.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.1
Pig sample Sample description nTPM
Caudate
nTPM: 40.1
Samples: 4

Max nTPM: 43.4
Min nTPM: 36.8
Sample A Female 40.6
Sample B Female 39.6
Sample C Male 43.4
Sample D Male 36.8

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