PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:575.2 nTPM
FANTOM5:187.4 Scaled Tags Per Million
Pig:91.4 nTPM
Mouse:3.9 nTPM
Allen mouse:4.0 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 575.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 64.0
2301 Female, age 85, both hemispheres 110.6
1984 Male, age 76, both hemispheres 60.9
2090 Male, age 80, both hemispheres 46.4
2188 Female, age 91, both hemispheres 38.2
Area postrema
nTPM: 575.2
2799 Male, age 61, both hemispheres 1313.9
2306 Male, age 80, both hemispheres 258.4
2054 Male, age 76, both hemispheres 153.3
Dorsal cochlear nucleus
nTPM: 57.7
2370 Male, age 61, both hemispheres 83.1
2378 Male, age 80, both hemispheres 63.4
2058 Male, age 76, both hemispheres 60.6
2187 Female, age 91, both hemispheres 45.7
2802 Male, age 74, right hemisphere 36.0
Dorsal medullary reticular nucleus
nTPM: 46.3
2373 Male, age 61, both hemispheres 58.5
2088 Male, age 76, both hemispheres 54.1
2040 Female, age 85, both hemispheres 26.2
Dorsal motor vagal complex
nTPM: 110.6
2643 Male, age 74, both hemispheres 168.8
2807 Female, age 85, both hemispheres 151.8
2185 Male, age 76, both hemispheres 147.9
2813 Female, age 72, unknown 120.2
2797 Male, age 61, both hemispheres 115.1
2844 Male, age 55, unknown 73.7
2133 Female, age 91, both hemispheres 55.3
2000 Male, age 74, unknown 52.4
Dorsal tegmental nucleus
nTPM: 89.0
2358 Male, age 61, both hemispheres 231.3
1936 Male, age 76, left hemisphere 52.7
2326 Male, age 74, both hemispheres 47.1
2083 Male, age 80, both hemispheres 24.8
Dorsolateral tegmental area
nTPM: 61.6
2337 Male, age 61, both hemispheres 152.6
2360 Male, age 74, both hemispheres 76.6
2141 Male, age 76, both hemispheres 39.4
2654 Male, age 80, both hemispheres 23.6
2751 Female, age 85, both hemispheres 15.6
Gigantocellular reticular nuclei, medullary
nTPM: 37.9
2462 Male, age 74, both hemispheres 84.4
2314 Male, age 61, both hemispheres 62.0
2387 Female, age 91, both hemispheres 27.1
2022 Male, age 76, right hemisphere 19.3
1876 Female, age 85, both hemispheres 18.3
2310 Male, age 80, both hemispheres 16.1
Gigantocellular reticular nuclei, pars
nTPM: 27.0
2706 Male, age 80, both hemispheres 32.6
2336 Male, age 61, both hemispheres 32.5
2330 Male, age 80, both hemispheres 30.7
2168 Male, age 76, both hemispheres 21.1
2084 Female, age 85, both hemispheres 18.3
Inferior olive
nTPM: 103.8
2178 Male, age 61, both hemispheres 137.0
2085 Female, age 85, both hemispheres 118.9
2379 Male, age 80, both hemispheres 112.5
2628 Female, age 91, both hemispheres 76.8
2563 Male, age 74, both hemispheres 73.5
Kolliker-Fuse nucleus
nTPM: 92.9
2315 Male, age 76, right hemisphere 244.5
2793 Female, age 91, left hemisphere 21.0
2163 Male, age 80, both hemispheres 13.3
Lateral lemniscal nuclei
nTPM: 28.6
2746 Female, age 85, left hemisphere 74.9
2453 Male, age 74, right hemisphere 25.4
2169 Male, age 76, both hemispheres 21.4
2036 Male, age 80, both hemispheres 13.0
2320 Female, age 91, left hemisphere 8.2
Lateral medullary reticular nucleus
nTPM: 142.9
2190 Female, age 85, both hemispheres 181.4
2305 Male, age 74, both hemispheres 162.0
2804 Female, age 91, both hemispheres 160.8
2852 Male, age 80, both hemispheres 151.3
2374 Male, age 61, both hemispheres 111.3
2044 Male, age 76, both hemispheres 90.4
Lateral parabrachial nucleus
nTPM: 95.4
2139 Female, age 85, right hemisphere 141.4
2792 Male, age 76, both hemispheres 132.0
2013 Male, age 80, both hemispheres 74.3
2790 Male, age 61, both hemispheres 33.8
Lateral vestibular nucleus
nTPM: 33.8
2311 Male, age 80, both hemispheres 49.6
2184 Male, age 76, both hemispheres 18.0
Locus coeruleus
nTPM: 46.6
2788 Male, age 74, unknown 63.6
1980 Male, age 76, both hemispheres 59.1
2317 Female, age 72, unknown 58.2
2123 Female, age 91, both hemispheres 52.0
2014 Male, age 55, unknown 42.5
2162 Male, age 80, both hemispheres 30.2
2720 Male, age 74, both hemispheres 20.5
Medial olivary nucleus
nTPM: 174.7
1943 Male, age 61, both hemispheres 231.5
1962 Male, age 76, both hemispheres 161.8
2851 Male, age 80, both hemispheres 153.0
2138 Female, age 91, both hemispheres 152.5
Medial parabrachial nucleus
nTPM: 26.8
2170 Female, age 91, both hemispheres 41.7
2854 Male, age 80, both hemispheres 31.6
2156 Male, age 61, both hemispheres 22.4
2786 Male, age 76, both hemispheres 22.4
2463 Female, age 85, right hemisphere 15.8
Medial periolivary nuclei
nTPM: 54.4
2791 Male, age 74, right hemisphere 119.3
2081 Male, age 80, both hemispheres 48.3
2063 Male, age 76, both hemispheres 47.6
2171 Female, age 85, both hemispheres 36.2
2458 Female, age 91, both hemispheres 20.6
Medial vestibular nucleus
nTPM: 46.9
2743 Female, age 85, both hemispheres 84.1
2134 Male, age 76, both hemispheres 66.9
2624 Male, age 61, both hemispheres 65.6
2801 Male, age 74, both hemispheres 51.1
2093 Male, age 80, both hemispheres 9.0
2803 Female, age 91, both hemispheres 4.8
Motor facial nucleus
nTPM: 45.6
2365 Male, age 74, right hemisphere 72.3
2126 Male, age 61, both hemispheres 67.2
2697 Female, age 85, both hemispheres 42.6
2795 Female, age 91, both hemispheres 41.8
2062 Male, age 76, both hemispheres 37.8
2327 Male, age 80, both hemispheres 11.9
Motor hypoglossal nucleus
nTPM: 51.0
2277 Male, age 76, both hemispheres 107.7
2461 Male, age 61, both hemispheres 55.0
2182 Male, age 80, both hemispheres 36.2
2132 Female, age 85, both hemispheres 32.7
2125 Female, age 91, both hemispheres 23.5
Motor trigeminal nucleus
nTPM: 30.9
2335 Male, age 61, both hemispheres 72.0
2309 Male, age 76, both hemispheres 24.1
2079 Male, age 80, both hemispheres 23.6
2560 Male, age 74, both hemispheres 21.1
2321 Female, age 91, both hemispheres 13.9
Nuclei of the trapezoid body
nTPM: 34.0
1983 Male, age 76, both hemispheres 48.4
2735 Female, age 85, both hemispheres 47.1
2368 Female, age 91, both hemispheres 29.5
2166 Male, age 80, both hemispheres 27.1
2159 Male, age 61, both hemispheres 17.9
Nucleus ambiguus
nTPM: 115.3
2071 Male, age 76, both hemispheres 191.3
2096 Female, age 85, both hemispheres 39.3
Nucleus cuneatus
nTPM: 105.2
2808 Female, age 85, both hemispheres 333.6
2380 Male, age 80, both hemispheres 193.6
2564 Male, age 74, both hemispheres 146.0
2562 Male, age 61, both hemispheres 66.2
2100 Male, age 76, both hemispheres 51.7
2376 Male, age 61, both hemispheres 51.3
2381 Male, age 80, both hemispheres 36.3
2131 Male, age 76, both hemispheres 35.9
2805 Female, age 91, both hemispheres 32.3
Nucleus gracilis
nTPM: 168.8
2627 Male, age 74, both hemispheres 255.0
2299 Female, age 85, both hemispheres 151.5
2382 Male, age 80, both hemispheres 100.0
Nucleus raphe magnus
nTPM: 35.2
2051 Male, age 76, both hemispheres 76.9
2455 Male, age 74, both hemispheres 67.4
2172 Female, age 85, both hemispheres 19.3
2328 Male, age 80, both hemispheres 19.2
2160 Male, age 61, both hemispheres 15.7
2459 Female, age 91, both hemispheres 12.9
Nucleus raphe obscurus
nTPM: 148.7
2142 Male, age 76, midline 231.2
2800 Male, age 61, midline 119.2
2845 Female, age 85, midline 95.6
Nucleus raphe pallidus
nTPM: 434.0
1924 Male, age 61, midline 1110.1
2145 Male, age 76, midline 141.4
2183 Male, age 80, midline 50.6
Nucleus tractus solitarii
nTPM: 80.0
2191 Female, age 85, both hemispheres 97.7
2656 Male, age 76, both hemispheres 86.8
2307 Male, age 80, both hemispheres 68.1
2144 Female, age 91, right hemisphere 67.4
Paramedian reticular nucleus
nTPM: 40.0
2052 Male, age 76, both hemispheres 71.7
2313 Male, age 61, both hemispheres 35.2
2057 Male, age 80, both hemispheres 33.8
2050 Female, age 85, both hemispheres 19.3
Parvicellular reticular nuclei
nTPM: 43.8
2119 Male, age 80, both hemispheres 57.2
2095 Male, age 76, both hemispheres 44.4
2558 Male, age 74, both hemispheres 29.8
Parvicellular reticular nuclei, medullary
nTPM: 21.4
2091 Female, age 85, both hemispheres 27.0
2181 Male, age 80, left hemisphere 20.4
2189 Female, age 91, both hemispheres 16.8
Pedunculopontine tegmental nucleus
nTPM: 49.9
2338 Male, age 61, both hemispheres 94.2
2334 Male, age 80, both hemispheres 32.1
1921 Female, age 85, both hemispheres 23.4
Peritrigeminal nucleus
nTPM: 180.2
2067 Female, age 85, both hemispheres 286.9
2136 Male, age 76, both hemispheres 129.1
2179 Male, age 61, both hemispheres 124.6
Pontine nuclei
nTPM: 28.7
2115 Male, age 80, left hemisphere 49.7
1863 Male, age 55, unknown 39.1
2109 Female, age 72, unknown 38.2
1968 Male, age 76, left hemisphere 28.5
2787 Female, age 85, both hemispheres 23.3
2319 Female, age 91, both hemispheres 22.3
2727 Male, age 61, right hemisphere 21.7
2454 Male, age 74, left hemisphere 6.6
Pontine raphe nucleus
nTPM: 30.4
2853 Male, age 76, midline 43.2
2122 Female, age 85, midline 17.6
Posteroventral cochlear nucleus
nTPM: 46.7
2070 Male, age 76, both hemispheres 73.0
2135 Female, age 91, both hemispheres 52.2
2341 Male, age 80, both hemispheres 51.2
2371 Male, age 61, both hemispheres 49.4
2752 Female, age 85, both hemispheres 7.5
Prepositus hypoglossal nucleus
nTPM: 73.1
2855 Female, age 85, right hemisphere 76.7
2086 Male, age 80, both hemispheres 69.4
Principal sensory trigeminal nucleus
nTPM: 21.0
2324 Male, age 76, both hemispheres 29.2
2158 Male, age 61, both hemispheres 23.8
2367 Female, age 91, left hemisphere 15.8
2008 Male, age 80, left hemisphere 15.2
Reticular pontine nucleus, caudal
nTPM: 27.3
2092 Male, age 76, both hemispheres 72.4
2457 Female, age 91, both hemispheres 13.9
2559 Male, age 74, both hemispheres 12.9
2332 Male, age 80, right hemisphere 10.0
Reticular pontine nucleus, oral
nTPM: 18.9
1939 Male, age 80, both hemispheres 28.9
2167 Male, age 76, both hemispheres 21.0
2012 Female, age 85, both hemispheres 19.6
2366 Female, age 91, both hemispheres 15.3
2361 Male, age 74, both hemispheres 10.0
Reticulotegmental nucleus
nTPM: 17.5
2325 Male, age 76, both hemispheres 25.8
2322 Female, age 91, both hemispheres 20.2
2333 Male, age 80, both hemispheres 13.3
2452 Male, age 74, both hemispheres 10.6
Spinal trigeminal nucleus, caudal
nTPM: 58.0
2308 Male, age 80, both hemispheres 98.2
2642 Male, age 74, both hemispheres 78.8
2312 Male, age 61, both hemispheres 52.8
2447 Male, age 76, both hemispheres 41.9
2390 Female, age 91, both hemispheres 18.3
Spinal trigeminal nucleus, interpolar
nTPM: 39.5
2066 Male, age 76, right hemisphere 76.7
2033 Male, age 80, both hemispheres 47.4
2386 Female, age 85, both hemispheres 40.7
2625 Male, age 61, both hemispheres 19.7
2389 Female, age 91, both hemispheres 13.0
Spinal trigeminal nucleus, oral
nTPM: 21.9
1978 Male, age 76, both hemispheres 36.1
2737 Female, age 85, both hemispheres 16.8
2164 Male, age 80, both hemispheres 12.8
Spinal vestibular nucleus
nTPM: 27.7
2748 Male, age 76, both hemispheres 46.7
2780 Male, age 80, both hemispheres 31.8
2796 Male, age 61, both hemispheres 31.4
2384 Male, age 74, both hemispheres 24.2
2806 Female, age 85, both hemispheres 21.8
2186 Female, age 91, both hemispheres 10.5
Subcoeruleus area
nTPM: 19.7
2451 Male, age 74, both hemispheres 24.2
1958 Male, age 80, both hemispheres 23.9
2089 Male, age 76, left hemisphere 22.9
2323 Female, age 91, left hemisphere 14.0
2369 Female, age 85, left hemisphere 13.3
Superior olive
nTPM: 46.0
2364 Male, age 74, right hemisphere 103.5
2020 Male, age 76, both hemispheres 49.6
1875 Female, age 85, both hemispheres 36.0
2329 Male, age 80, right hemisphere 21.8
2561 Female, age 91, both hemispheres 19.3
Superior vestibular nucleus
nTPM: 98.0
2061 Male, age 76, both hemispheres 130.7
2383 Male, age 74, both hemispheres 99.7
2015 Male, age 80, both hemispheres 63.7
Ventral medullary reticular nucleus
nTPM: 67.5
2372 Male, age 61, both hemispheres 76.6
2060 Male, age 76, both hemispheres 58.4
Ventral periolivary nuclei
nTPM: 46.0
2130 Female, age 85, both hemispheres 68.4
2023 Male, age 76, both hemispheres 64.5
2165 Male, age 80, both hemispheres 34.9
2794 Female, age 91, left hemisphere 16.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 106.3
2741 Female, age 85, both hemispheres 131.0
1986 Male, age 76, both hemispheres 118.5
2302 Female, age 91, both hemispheres 115.0
2180 Male, age 61, both hemispheres 98.7
2118 Male, age 80, both hemispheres 68.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 50.4
2359 Male, age 61, both hemispheres 86.0
1959 Male, age 76, both hemispheres 63.5
2840 Female, age 85, both hemispheres 50.7
2161 Male, age 80, both hemispheres 42.1
2449 Male, age 74, both hemispheres 40.9
2456 Female, age 91, both hemispheres 19.3

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 187.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 64.5
FF:10165-103B3 76 years, female 84.7
FF:10182-103D2 60 years, female 44.3
Medulla oblongata
Scaled Tags Per Million: 187.4
FF:10038-101F2 18-64 years, mixed 239.7
FF:10155-103A2 76 years, female 217.7
FF:10174-103C3 60 years, female 104.8
Pons
Scaled Tags Per Million: 41.5
FF:10033-101E6 18-54 years, mixed 41.5

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 91.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 91.4
Samples: 4

Max nTPM: 137.3
Min nTPM: 8.7
Sample A Female 126.7
Sample B Female 8.7
Sample C Male 92.8
Sample D Male 137.3
Pons
nTPM: 54.6
Samples: 4

Max nTPM: 160.0
Min nTPM: 3.9
Sample A Female 160.0
Sample B Female 3.9
Sample C Male 11.4
Sample D Male 43.2

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 3.9
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 3.9
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.6
Sample A Male 5.2
Sample B Male 4.4
Sample C Female 2.6
Sample D Female 3.5

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.0
1662 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 4.0
1661 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 1.9
Pons
Expression energy: 3.8
1662 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 3.8
1661 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 2.0

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