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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:138.9 nTPM
FANTOM5:242.4 Scaled Tags Per Million
Pig:132.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006741
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.9
Samples: 246

Max nTPM: 458.0
Min nTPM: 26.5
Std nTPM: 57.8
Median nTPM: 132.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 458.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 351.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 295.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 294.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 277.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 273.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 263.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 262.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 258.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 252.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 251.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 237.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 234.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 234.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 230.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 227.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 226.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 225.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 225.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 224.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 221.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 221.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 220.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 218.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 215.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 214.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 210.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 210.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 209.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 209.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 209.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 203.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 203.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 202.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 199.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 197.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 197.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 193.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 192.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 191.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 190.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 190.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 190.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 186.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 185.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 184.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 183.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 182.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 178.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 177.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 175.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 173.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 172.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 172.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 171.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 170.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 170.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 169.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 168.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 168.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 167.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 167.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 167.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 166.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 166.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 164.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 163.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 163.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 163.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 162.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 161.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 160.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 160.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 160.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 159.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 159.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 157.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 157.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 156.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 156.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 156.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 155.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 153.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 153.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 152.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 152.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 152.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 151.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 151.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 150.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 150.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 150.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 150.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 148.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 146.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 145.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 145.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 145.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 144.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 144.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 143.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 143.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 142.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 142.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 141.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 141.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 141.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 141.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 139.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 139.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 138.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 138.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 138.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 137.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 137.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 136.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 136.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 136.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 135.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 134.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 134.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 133.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 133.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 132.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 132.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 132.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 131.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 131.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 130.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 129.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 127.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 125.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 125.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 125.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 125.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 124.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 124.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 123.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 121.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 120.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 120.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 120.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 119.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 119.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 118.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 117.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 117.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 117.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 115.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 115.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 115.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 114.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 114.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 114.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 113.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 113.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 113.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 112.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 112.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 111.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 111.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 110.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 109.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 107.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 107.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 107.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 106.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 106.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 106.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 106.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 105.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 105.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 104.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 104.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 103.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 103.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 102.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 101.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 101.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 100.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 100.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 96.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 96.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 95.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 94.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 93.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 93.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 93.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 92.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 91.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 90.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 90.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 90.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 90.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 89.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 88.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 87.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 87.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 87.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 86.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 86.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 86.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 84.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 84.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 84.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 83.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 83.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 82.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 82.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 80.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 80.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 80.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 78.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 77.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 77.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 77.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 77.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 76.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 76.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 75.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 75.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 73.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 72.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 72.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 72.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 71.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 70.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 70.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 69.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 69.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 64.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 64.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 61.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 57.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 54.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 44.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 44.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 40.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 40.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 38.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 33.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 26.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

242.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 242.4
FF:10164-103B2 76 years, female 242.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.0
Pig sample Sample description nTPM
Caudate
nTPM: 132.1
Samples: 4

Max nTPM: 153.6
Min nTPM: 99.3
Sample A Female 99.3
Sample B Female 153.6
Sample C Male 149.5
Sample D Male 125.8

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