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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:119.3 nTPM
FANTOM5:143.9 Scaled Tags Per Million
Pig:127.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB014882Antibody CAB040567
Glial cells HighMedium
Neuronal cells LowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 119.3
Samples: 246

Max nTPM: 273.9
Min nTPM: 33.3
Std nTPM: 36.5
Median nTPM: 114.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 273.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 215.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 211.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 199.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 194.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 194.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 192.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 191.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 188.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 188.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 185.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 183.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 182.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 180.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 180.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 179.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 178.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 176.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 173.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 173.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 173.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 172.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 172.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 169.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 169.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 168.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 167.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 167.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 166.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 166.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 166.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 163.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 162.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 158.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 158.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 157.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 157.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 157.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 157.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 156.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 155.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 155.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 154.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 154.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 153.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 151.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 150.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 149.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 148.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 147.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 146.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 146.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 145.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 145.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 145.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 145.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 143.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 142.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 142.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 142.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 142.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 142.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 141.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 141.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 140.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 138.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 137.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 137.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 137.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 137.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 137.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 137.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 136.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 135.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 135.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 134.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 134.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 134.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 134.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 133.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 132.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 132.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 131.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 130.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 129.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 129.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 128.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 127.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 127.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 127.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 126.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 126.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 126.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 125.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 124.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 124.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 123.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 122.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 122.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 121.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 121.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 121.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 121.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 120.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 120.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 119.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 118.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 118.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 117.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 116.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 116.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 116.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 115.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 114.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 114.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 114.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 114.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 114.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 113.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 113.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 113.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 113.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 112.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 112.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 111.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 111.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 111.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 110.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 110.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 110.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 109.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 109.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 109.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 109.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 108.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 108.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 108.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 107.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 107.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 106.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 106.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 106.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 106.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 105.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 105.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 104.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 104.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 104.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 103.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 102.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 102.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 102.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 102.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 102.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 102.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 100.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 99.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 99.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 99.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 97.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 96.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 96.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 96.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 95.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 94.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 94.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 94.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 94.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 94.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 93.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 92.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 91.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 91.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 90.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 90.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 90.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 90.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 89.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 88.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 88.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 87.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 87.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 87.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 87.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 87.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 86.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 86.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 86.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 86.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 85.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 85.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 84.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 84.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 83.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 83.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 82.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 82.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 82.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 81.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 81.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 80.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 80.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 80.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 80.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 78.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 77.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 77.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 77.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 76.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 76.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 76.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 74.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 73.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 73.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 73.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 73.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 72.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 72.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 71.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 69.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 68.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 67.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 66.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 65.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 64.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 64.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 63.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 62.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 51.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 48.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 42.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 33.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 143.9
FF:10164-103B2 76 years, female 143.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.4
Pig sample Sample description nTPM
Caudate
nTPM: 127.4
Samples: 4

Max nTPM: 143.1
Min nTPM: 110.3
Sample A Female 116.2
Sample B Female 139.8
Sample C Male 143.1
Sample D Male 110.3

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