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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
48.8
nTPM
GTEx:
39.3
nTPM
FANTOM5:
31.0
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA042789
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 48.8
1898
Male, age 80, left hemisphere
63.4
1855
Male, age 76, left hemisphere
50.6
1911
Female, age 85, right hemisphere
46.1
2148
Female, age 91, left hemisphere
44.6
2529
Female, age 94, left hemisphere
44.5
2621
Female, age 67, right hemisphere
43.6
HIPPOCAMPUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 39.3
Samples: 197
Max nTPM: 71.1
Min nTPM: 17.1
Std nTPM: 9.5
Median nTPM: 37.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
71.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
64.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
63.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
63.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
61.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
61.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
59.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
59.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
59.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
58.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
58.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
57.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
56.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
56.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
55.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
54.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
53.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
53.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
53.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
52.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
52.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
52.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
52.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
52.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
52.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
52.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
51.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
50.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
50.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
49.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
49.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
49.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
48.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
48.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
48.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
48.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
47.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
47.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
47.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
47.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
47.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
46.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
46.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
46.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
45.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
45.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
45.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
45.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
44.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
44.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
44.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
44.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
43.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
43.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
42.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
42.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
42.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
42.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
42.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
42.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
42.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
42.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
42.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
42.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
41.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
41.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
41.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
41.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
41.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
41.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
41.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
40.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
40.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
40.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
40.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
40.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
40.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
40.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
39.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
39.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
39.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
39.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
39.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
39.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
39.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
39.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
39.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
39.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
38.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
38.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
38.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
38.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
38.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
38.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
38.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
38.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
38.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
37.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
37.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
37.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
37.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
37.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
37.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
37.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
37.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
37.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
37.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
37.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
37.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
37.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
36.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
36.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
36.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
36.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
36.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
36.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
36.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
36.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
36.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
36.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
36.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
35.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
35.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
35.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
35.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
35.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
35.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
34.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
34.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
34.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
34.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
34.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
34.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
33.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
33.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
33.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
33.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
33.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
33.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
33.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
33.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
32.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
32.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
32.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
32.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
32.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
32.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
32.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
32.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
32.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
32.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
31.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
31.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
31.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
31.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
31.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
31.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
31.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
31.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
31.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
30.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
30.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
30.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
30.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
30.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
30.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
29.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
29.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
29.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
29.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
29.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
28.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
28.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
28.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
28.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
28.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
27.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
27.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
27.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
27.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
27.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
27.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
26.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
26.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
26.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
25.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
25.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
24.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
24.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
23.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
23.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
18.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
17.1
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HIPPOCAMPUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
