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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:414.6 nTPM
FANTOM5:333.8 Scaled Tags Per Million
Pig:158.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA034517
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 414.6
Samples: 246

Max nTPM: 1147.8
Min nTPM: 178.0
Std nTPM: 136.1
Median nTPM: 389.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1147.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1064.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 922.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 896.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 886.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 831.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 797.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 740.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 720.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 702.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 693.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 690.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 667.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 652.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 598.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 598.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 597.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 590.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 584.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 575.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 570.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 570.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 569.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 565.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 559.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 554.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 554.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 553.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 549.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 546.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 542.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 542.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 540.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 536.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 529.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 525.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 519.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 518.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 518.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 512.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 511.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 510.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 508.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 508.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 508.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 506.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 499.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 497.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 494.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 490.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 490.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 489.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 489.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 488.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 477.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 475.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 474.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 472.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 470.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 469.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 469.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 467.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 465.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 464.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 459.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 457.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 456.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 453.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 450.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 445.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 443.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 442.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 440.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 440.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 440.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 439.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 436.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 436.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 434.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 434.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 433.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 432.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 431.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 430.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 430.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 429.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 428.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 427.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 427.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 425.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 424.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 424.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 422.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 421.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 420.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 420.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 420.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 417.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 414.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 412.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 412.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 407.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 403.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 403.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 403.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 403.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 402.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 400.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 399.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 399.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 398.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 398.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 396.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 395.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 394.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 393.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 392.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 392.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 392.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 392.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 392.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 391.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 389.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 389.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 386.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 384.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 382.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 382.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 381.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 381.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 380.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 379.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 377.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 375.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 375.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 374.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 374.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 373.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 372.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 371.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 370.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 370.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 370.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 369.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 367.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 367.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 366.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 366.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 363.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 363.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 362.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 361.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 361.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 361.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 360.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 360.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 359.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 356.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 356.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 355.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 354.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 352.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 352.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 352.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 350.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 350.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 350.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 349.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 348.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 347.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 345.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 345.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 344.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 343.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 343.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 342.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 342.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 341.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 341.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 340.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 340.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 338.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 338.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 337.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 337.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 336.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 336.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 335.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 333.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 333.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 333.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 331.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 330.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 327.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 325.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 324.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 321.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 320.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 317.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 314.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 312.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 311.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 310.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 309.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 309.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 308.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 308.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 306.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 306.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 303.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 302.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 300.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 298.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 298.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 298.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 294.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 294.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 293.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 291.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 290.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 290.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 288.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 286.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 282.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 277.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 273.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 267.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 263.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 258.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 257.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 254.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 247.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 247.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 244.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 240.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 239.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 237.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 232.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 232.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 230.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 228.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 224.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 217.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 208.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 179.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 178.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

333.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 333.8
FF:10164-103B2 76 years, female 333.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.1
Pig sample Sample description nTPM
Caudate
nTPM: 158.1
Samples: 4

Max nTPM: 183.7
Min nTPM: 136.0
Sample A Female 144.5
Sample B Female 168.0
Sample C Male 183.7
Sample D Male 136.0

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