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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:201.2 nTPM
FANTOM5:309.9 Scaled Tags Per Million
Pig:253.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038602Antibody HPA057592Antibody CAB006329
Glial cells HighLowMedium
Neuronal cells MediumMediumHigh







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 201.2
Samples: 246

Max nTPM: 461.0
Min nTPM: 99.9
Std nTPM: 52.3
Median nTPM: 188.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 461.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 359.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 357.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 329.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 323.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 323.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 310.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 308.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 308.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 303.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 299.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 299.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 297.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 295.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 294.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 293.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 291.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 290.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 287.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 287.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 280.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 279.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 279.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 279.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 273.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 270.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 269.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 268.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 267.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 266.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 264.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 264.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 262.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 261.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 259.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 258.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 256.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 256.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 255.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 253.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 253.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 250.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 248.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 248.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 247.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 245.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 244.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 244.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 242.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 240.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 239.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 238.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 238.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 235.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 235.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 233.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 232.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 232.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 231.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 231.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 230.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 230.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 230.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 229.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 229.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 228.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 228.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 227.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 227.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 226.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 225.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 223.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 220.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 219.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 219.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 219.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 219.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 218.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 218.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 217.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 215.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 215.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 214.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 214.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 213.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 213.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 212.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 211.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 211.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 210.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 210.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 210.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 209.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 208.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 208.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 208.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 207.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 206.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 206.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 206.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 204.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 202.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 202.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 202.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 202.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 201.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 200.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 200.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 199.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 199.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 198.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 198.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 197.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 196.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 196.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 196.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 193.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 193.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 192.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 192.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 190.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 189.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 189.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 188.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 187.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 187.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 187.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 186.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 186.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 186.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 186.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 185.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 185.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 185.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 184.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 184.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 184.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 182.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 181.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 181.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 181.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 181.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 180.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 179.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 179.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 179.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 178.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 178.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 178.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 177.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 177.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 177.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 176.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 176.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 175.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 175.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 175.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 174.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 174.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 174.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 174.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 173.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 173.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 172.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 172.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 172.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 171.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 171.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 171.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 171.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 170.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 170.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 168.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 167.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 167.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 166.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 166.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 165.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 165.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 165.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 165.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 165.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 165.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 165.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 165.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 164.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 164.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 163.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 163.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 163.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 163.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 163.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 162.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 162.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 162.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 161.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 161.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 160.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 160.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 159.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 158.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 157.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 156.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 156.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 155.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 155.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 155.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 153.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 151.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 151.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 150.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 150.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 149.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 149.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 148.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 147.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 147.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 147.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 145.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 145.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 145.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 143.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 143.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 142.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 141.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 140.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 139.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 138.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 134.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 134.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 132.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 130.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 129.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 129.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 129.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 128.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 124.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 124.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 124.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 121.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 118.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 118.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 118.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 116.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 99.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 309.9
FF:10164-103B2 76 years, female 309.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.6
Pig sample Sample description nTPM
Caudate
nTPM: 253.6
Samples: 4

Max nTPM: 344.1
Min nTPM: 190.3
Sample A Female 190.3
Sample B Female 268.8
Sample C Male 344.1
Sample D Male 211.2

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